| Institute of Archaeology, Brno (99) |
| Institute of Archaeology, Prague (246) |
| Astronomical Institute (244) |
| Biology Centre (416) |
| Institute of Biotechnology (48) |
| Institute of Botany (396) |
| Institute of Biophysics (298) |
| Institute of Entomology (50) |
| Institute of Ethnology (534) |
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| Institute of Philosophy (532) |
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| Institute of Physiology (80) |
| Institute of Geophysics (197) |
| Institute of Geology (458) |
| Institute of History (484) |
| Institute of Hydrobiology (116) |
| Library of the ASCR (73) |
| Masaryk Institute and Archives of the ASCR (494) |
| Institute of Mathematics (417) |
| Institute of Microbiology (506) |
| Economics Institute (901) |
| Oriental Institute (39) |
| Institute of Parasitology (8) |
| Institute of Psychology (320) |
| Institute of Slavonic Studies (114) |
| Institute of Sociology (2,829) |
| Institute of Sociology (CVVM) (55) |
| Technology Centre (0) |
| Institute of Analytical Chemistry (487) |
| Institute of Inorganic Chemistry (420) |
| Institute of Vertebrate Biology (528) |
| Institute of Art History (353) |
| Institute of Experimental Botany (113) |
| Institute of Experimental Medicine (143) |
| Institute of Photonics and Electronics (626) |
| J. Heyrovsky Institute of Physical Chemistry (465) |
| Institute of Physical Engineering (0) |
| Institute of Atmospheric Physics (265) |
| Institute of Physics of Materials (1,005) |
| Institute of Plasma Physics (600) |
| Institute of Geonics (1,322) |
| Institute of Chemical Process Fundamentals (2,045) |
| Institute of Computer Science (1,639) |
| Nuclear Physics Institute (440) |
| Institute of Macromolecular Chemistry (436) |
| Institute of Plant Molecular Biology (42) |
| Institute of Molecular Genetics (85) |
| Institute of Organic Chemistry and Biochemistry (565) |
| Institute of Czech Literature (452) |
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| Institute of Hydrodynamics (613) |
| Institute of the Czech Language (779) |
| Institute for Classical Studies (0) |
| Institute of Contemporary History (284) |
| Institute of Scientific Instruments (1,418) |
| Institute of Soil Biology (192) |
| Institute of State and Law (161) |
| Institute of Rock Structure and Mechanics (377) |
| Institute of Theoretical and Applied Mechanics (1,278) |
| Institute of Information Theory and Automation (1,562) |
| Institute of Thermomechanics (3,149) |
| Global Change Research Institute (577) |
| Institute of Animal Physiology and Genetics (93) |
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