| Institute of Archaeology, Brno (94) |
| Institute of Archaeology, Prague (239) |
| Astronomical Institute (244) |
| Biology Centre (360) |
| Institute of Biotechnology (47) |
| Institute of Botany (388) |
| Institute of Biophysics (298) |
| Institute of Entomology (50) |
| Institute of Ethnology (517) |
| Institute of Pharmacology (1) |
| Institute of Philosophy (523) |
| Institute of Physics (558) |
| Institute of Physiology (77) |
| Institute of Geophysics (197) |
| Institute of Geology (451) |
| Institute of History (472) |
| Institute of Hydrobiology (116) |
| Library of the ASCR (70) |
| Masaryk Institute and Archives of the ASCR (485) |
| Institute of Mathematics (407) |
| Institute of Microbiology (501) |
| Economics Institute (833) |
| Oriental Institute (37) |
| Institute of Parasitology (8) |
| Institute of Psychology (316) |
| Institute of Slavonic Studies (113) |
| Institute of Sociology (2,704) |
| Institute of Sociology (CVVM) (55) |
| Technology Centre (0) |
| Institute of Analytical Chemistry (458) |
| Institute of Inorganic Chemistry (415) |
| Institute of Vertebrate Biology (523) |
| Institute of Art History (329) |
| Institute of Experimental Botany (113) |
| Institute of Experimental Medicine (138) |
| Institute of Photonics and Electronics (626) |
| J. Heyrovsky Institute of Physical Chemistry (432) |
| Institute of Physical Engineering (0) |
| Institute of Atmospheric Physics (261) |
| Institute of Physics of Materials (1,003) |
| Institute of Plasma Physics (591) |
| Institute of Geonics (1,280) |
| Institute of Chemical Process Fundamentals (1,978) |
| Institute of Computer Science (1,620) |
| Nuclear Physics Institute (437) |
| Institute of Macromolecular Chemistry (430) |
| Institute of Plant Molecular Biology (42) |
| Institute of Molecular Genetics (81) |
| Institute of Organic Chemistry and Biochemistry (545) |
| Institute of Czech Literature (434) |
| Institute of Electrical Engineering (0) |
| Institute of Hydrodynamics (600) |
| Institute of the Czech Language (764) |
| Institute for Classical Studies (0) |
| Institute of Contemporary History (269) |
| Institute of Scientific Instruments (1,249) |
| Institute of Soil Biology (192) |
| Institute of State and Law (157) |
| Institute of Rock Structure and Mechanics (376) |
| Institute of Theoretical and Applied Mechanics (1,215) |
| Institute of Information Theory and Automation (1,529) |
| Institute of Thermomechanics (3,064) |
| Global Change Research Institute (547) |
| Institute of Animal Physiology and Genetics (93) |
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