| Institute of Archaeology, Brno (98) |
| Institute of Archaeology, Prague (246) |
| Astronomical Institute (244) |
| Biology Centre (390) |
| Institute of Biotechnology (48) |
| Institute of Botany (392) |
| Institute of Biophysics (298) |
| Institute of Entomology (50) |
| Institute of Ethnology (532) |
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| Institute of Philosophy (527) |
| Institute of Physics (577) |
| Institute of Physiology (80) |
| Institute of Geophysics (197) |
| Institute of Geology (457) |
| Institute of History (483) |
| Institute of Hydrobiology (116) |
| Library of the ASCR (73) |
| Masaryk Institute and Archives of the ASCR (494) |
| Institute of Mathematics (415) |
| Institute of Microbiology (506) |
| Economics Institute (885) |
| Oriental Institute (39) |
| Institute of Parasitology (8) |
| Institute of Psychology (320) |
| Institute of Slavonic Studies (114) |
| Institute of Sociology (2,807) |
| Institute of Sociology (CVVM) (55) |
| Technology Centre (0) |
| Institute of Analytical Chemistry (485) |
| Institute of Inorganic Chemistry (418) |
| Institute of Vertebrate Biology (526) |
| Institute of Art History (334) |
| Institute of Experimental Botany (113) |
| Institute of Experimental Medicine (140) |
| Institute of Photonics and Electronics (626) |
| J. Heyrovsky Institute of Physical Chemistry (462) |
| Institute of Physical Engineering (0) |
| Institute of Atmospheric Physics (264) |
| Institute of Physics of Materials (1,005) |
| Institute of Plasma Physics (600) |
| Institute of Geonics (1,303) |
| Institute of Chemical Process Fundamentals (2,034) |
| Institute of Computer Science (1,637) |
| Nuclear Physics Institute (438) |
| Institute of Macromolecular Chemistry (435) |
| Institute of Plant Molecular Biology (42) |
| Institute of Molecular Genetics (84) |
| Institute of Organic Chemistry and Biochemistry (558) |
| Institute of Czech Literature (448) |
| Institute of Electrical Engineering (0) |
| Institute of Hydrodynamics (610) |
| Institute of the Czech Language (775) |
| Institute for Classical Studies (0) |
| Institute of Contemporary History (281) |
| Institute of Scientific Instruments (1,404) |
| Institute of Soil Biology (192) |
| Institute of State and Law (160) |
| Institute of Rock Structure and Mechanics (377) |
| Institute of Theoretical and Applied Mechanics (1,263) |
| Institute of Information Theory and Automation (1,559) |
| Institute of Thermomechanics (3,132) |
| Global Change Research Institute (568) |
| Institute of Animal Physiology and Genetics (93) |
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