| Institute of Archaeology, Brno (99) |
| Institute of Archaeology, Prague (255) |
| Astronomical Institute (248) |
| Biology Centre (451) |
| Institute of Biotechnology (48) |
| Institute of Botany (401) |
| Institute of Biophysics (298) |
| Institute of Entomology (50) |
| Institute of Ethnology (538) |
| Institute of Pharmacology (1) |
| Institute of Philosophy (539) |
| Institute of Physics (589) |
| Institute of Physiology (80) |
| Institute of Geophysics (197) |
| Institute of Geology (470) |
| Institute of History (492) |
| Institute of Hydrobiology (116) |
| Library of the ASCR (79) |
| Masaryk Institute and Archives of the ASCR (505) |
| Institute of Mathematics (426) |
| Institute of Microbiology (509) |
| Economics Institute (952) |
| Oriental Institute (40) |
| Institute of Parasitology (8) |
| Institute of Psychology (322) |
| Institute of Slavonic Studies (114) |
| Institute of Sociology (2,911) |
| Institute of Sociology (CVVM) (55) |
| Technology Centre (0) |
| Institute of Analytical Chemistry (496) |
| Institute of Inorganic Chemistry (423) |
| Institute of Vertebrate Biology (530) |
| Institute of Art History (360) |
| Institute of Experimental Botany (113) |
| Institute of Experimental Medicine (143) |
| Institute of Photonics and Electronics (627) |
| J. Heyrovsky Institute of Physical Chemistry (483) |
| Institute of Physical Engineering (0) |
| Institute of Atmospheric Physics (274) |
| Institute of Physics of Materials (1,023) |
| Institute of Plasma Physics (603) |
| Institute of Geonics (1,335) |
| Institute of Chemical Process Fundamentals (2,105) |
| Institute of Computer Science (1,656) |
| Nuclear Physics Institute (442) |
| Institute of Macromolecular Chemistry (439) |
| Institute of Plant Molecular Biology (42) |
| Institute of Molecular Genetics (85) |
| Institute of Organic Chemistry and Biochemistry (578) |
| Institute of Czech Literature (456) |
| Institute of Electrical Engineering (0) |
| Institute of Hydrodynamics (627) |
| Institute of the Czech Language (797) |
| Institute for Classical Studies (0) |
| Institute of Contemporary History (287) |
| Institute of Scientific Instruments (1,500) |
| Institute of Soil Biology (192) |
| Institute of State and Law (164) |
| Institute of Rock Structure and Mechanics (378) |
| Institute of Theoretical and Applied Mechanics (1,341) |
| Institute of Information Theory and Automation (1,577) |
| Institute of Thermomechanics (3,221) |
| Global Change Research Institute (591) |
| Institute of Animal Physiology and Genetics (93) |
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