| Institute of Archaeology, Brno (104) |
| Institute of Archaeology, Prague (261) |
| Astronomical Institute (249) |
| Biology Centre (501) |
| Institute of Biotechnology (50) |
| Institute of Botany (416) |
| Institute of Biophysics (299) |
| Institute of Entomology (50) |
| Institute of Ethnology (544) |
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| Institute of Physiology (80) |
| Institute of Geophysics (197) |
| Institute of Geology (478) |
| Institute of History (506) |
| Institute of Hydrobiology (116) |
| Library of the ASCR (81) |
| Masaryk Institute and Archives of the ASCR (517) |
| Institute of Mathematics (441) |
| Institute of Microbiology (511) |
| Economics Institute (992) |
| Oriental Institute (42) |
| Institute of Parasitology (8) |
| Institute of Psychology (324) |
| Institute of Slavonic Studies (114) |
| Institute of Sociology (3,064) |
| Institute of Sociology (CVVM) (55) |
| Technology Centre (0) |
| Institute of Analytical Chemistry (505) |
| Institute of Inorganic Chemistry (429) |
| Institute of Vertebrate Biology (541) |
| Institute of Art History (373) |
| Institute of Experimental Botany (113) |
| Institute of Experimental Medicine (144) |
| Institute of Photonics and Electronics (627) |
| J. Heyrovsky Institute of Physical Chemistry (495) |
| Institute of Physical Engineering (0) |
| Institute of Atmospheric Physics (283) |
| Institute of Physics of Materials (1,043) |
| Institute of Plasma Physics (609) |
| Institute of Geonics (1,355) |
| Institute of Chemical Process Fundamentals (2,166) |
| Institute of Computer Science (1,675) |
| Nuclear Physics Institute (447) |
| Institute of Macromolecular Chemistry (441) |
| Institute of Plant Molecular Biology (42) |
| Institute of Molecular Genetics (86) |
| Institute of Organic Chemistry and Biochemistry (589) |
| Institute of Czech Literature (470) |
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| Institute of Hydrodynamics (642) |
| Institute of the Czech Language (814) |
| Institute for Classical Studies (0) |
| Institute of Contemporary History (287) |
| Institute of Scientific Instruments (1,663) |
| Institute of Soil Biology (192) |
| Institute of State and Law (170) |
| Institute of Rock Structure and Mechanics (378) |
| Institute of Theoretical and Applied Mechanics (1,390) |
| Institute of Information Theory and Automation (1,594) |
| Institute of Thermomechanics (3,358) |
| Global Change Research Institute (623) |
| Institute of Animal Physiology and Genetics (96) |
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