| Institute of Archaeology, Brno (89) |
| Institute of Archaeology, Prague (227) |
| Astronomical Institute (231) |
| Biology Centre (309) |
| Institute of Biotechnology (47) |
| Institute of Botany (379) |
| Institute of Biophysics (252) |
| Institute of Entomology (50) |
| Institute of Ethnology (467) |
| Institute of Pharmacology (1) |
| Institute of Philosophy (514) |
| Institute of Physics (500) |
| Institute of Physiology (76) |
| Institute of Geophysics (197) |
| Institute of Geology (429) |
| Institute of History (443) |
| Institute of Hydrobiology (116) |
| Library of the ASCR (63) |
| Masaryk Institute and Archives of the ASCR (467) |
| Institute of Mathematics (386) |
| Institute of Microbiology (483) |
| Economics Institute (720) |
| Oriental Institute (36) |
| Institute of Parasitology (8) |
| Institute of Psychology (306) |
| Institute of Slavonic Studies (105) |
| Institute of Sociology (2,292) |
| Institute of Sociology (CVVM) (55) |
| Technology Centre (0) |
| Institute of Analytical Chemistry (403) |
| Institute of Inorganic Chemistry (405) |
| Institute of Vertebrate Biology (487) |
| Institute of Art History (297) |
| Institute of Experimental Botany (112) |
| Institute of Experimental Medicine (128) |
| Institute of Photonics and Electronics (623) |
| J. Heyrovsky Institute of Physical Chemistry (385) |
| Institute of Physical Engineering (0) |
| Institute of Atmospheric Physics (255) |
| Institute of Physics of Materials (967) |
| Institute of Plasma Physics (530) |
| Institute of Geonics (1,201) |
| Institute of Chemical Process Fundamentals (1,773) |
| Institute of Computer Science (1,579) |
| Nuclear Physics Institute (419) |
| Institute of Macromolecular Chemistry (425) |
| Institute of Plant Molecular Biology (42) |
| Institute of Molecular Genetics (80) |
| Institute of Organic Chemistry and Biochemistry (523) |
| Institute of Czech Literature (392) |
| Institute of Electrical Engineering (0) |
| Institute of Hydrodynamics (554) |
| Institute of the Czech Language (695) |
| Institute for Classical Studies (0) |
| Institute of Contemporary History (252) |
| Institute of Scientific Instruments (1,037) |
| Institute of Soil Biology (192) |
| Institute of State and Law (148) |
| Institute of Rock Structure and Mechanics (369) |
| Institute of Theoretical and Applied Mechanics (1,080) |
| Institute of Information Theory and Automation (1,457) |
| Institute of Thermomechanics (2,874) |
| Global Change Research Institute (494) |
| Institute of Animal Physiology and Genetics (89) |
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