| Institute of Archaeology, Brno (94) |
| Institute of Archaeology, Prague (236) |
| Astronomical Institute (233) |
| Biology Centre (340) |
| Institute of Biotechnology (47) |
| Institute of Botany (381) |
| Institute of Biophysics (298) |
| Institute of Entomology (50) |
| Institute of Ethnology (504) |
| Institute of Pharmacology (1) |
| Institute of Philosophy (519) |
| Institute of Physics (534) |
| Institute of Physiology (77) |
| Institute of Geophysics (197) |
| Institute of Geology (445) |
| Institute of History (461) |
| Institute of Hydrobiology (116) |
| Library of the ASCR (69) |
| Masaryk Institute and Archives of the ASCR (481) |
| Institute of Mathematics (402) |
| Institute of Microbiology (500) |
| Economics Institute (785) |
| Oriental Institute (36) |
| Institute of Parasitology (8) |
| Institute of Psychology (315) |
| Institute of Slavonic Studies (113) |
| Institute of Sociology (2,644) |
| Institute of Sociology (CVVM) (55) |
| Technology Centre (0) |
| Institute of Analytical Chemistry (451) |
| Institute of Inorganic Chemistry (410) |
| Institute of Vertebrate Biology (515) |
| Institute of Art History (321) |
| Institute of Experimental Botany (113) |
| Institute of Experimental Medicine (136) |
| Institute of Photonics and Electronics (626) |
| J. Heyrovsky Institute of Physical Chemistry (429) |
| Institute of Physical Engineering (0) |
| Institute of Atmospheric Physics (260) |
| Institute of Physics of Materials (999) |
| Institute of Plasma Physics (591) |
| Institute of Geonics (1,265) |
| Institute of Chemical Process Fundamentals (1,952) |
| Institute of Computer Science (1,611) |
| Nuclear Physics Institute (430) |
| Institute of Macromolecular Chemistry (430) |
| Institute of Plant Molecular Biology (42) |
| Institute of Molecular Genetics (80) |
| Institute of Organic Chemistry and Biochemistry (542) |
| Institute of Czech Literature (430) |
| Institute of Electrical Engineering (0) |
| Institute of Hydrodynamics (594) |
| Institute of the Czech Language (753) |
| Institute for Classical Studies (0) |
| Institute of Contemporary History (262) |
| Institute of Scientific Instruments (1,190) |
| Institute of Soil Biology (192) |
| Institute of State and Law (155) |
| Institute of Rock Structure and Mechanics (376) |
| Institute of Theoretical and Applied Mechanics (1,180) |
| Institute of Information Theory and Automation (1,515) |
| Institute of Thermomechanics (2,999) |
| Global Change Research Institute (541) |
| Institute of Animal Physiology and Genetics (93) |
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