| Institute of Archaeology, Brno (89) |
| Institute of Archaeology, Prague (229) |
| Astronomical Institute (231) |
| Biology Centre (309) |
| Institute of Biotechnology (47) |
| Institute of Botany (379) |
| Institute of Biophysics (252) |
| Institute of Entomology (50) |
| Institute of Ethnology (467) |
| Institute of Pharmacology (1) |
| Institute of Philosophy (515) |
| Institute of Physics (501) |
| Institute of Physiology (76) |
| Institute of Geophysics (197) |
| Institute of Geology (431) |
| Institute of History (450) |
| Institute of Hydrobiology (116) |
| Library of the ASCR (65) |
| Masaryk Institute and Archives of the ASCR (468) |
| Institute of Mathematics (386) |
| Institute of Microbiology (483) |
| Economics Institute (729) |
| Oriental Institute (36) |
| Institute of Parasitology (8) |
| Institute of Psychology (306) |
| Institute of Slavonic Studies (106) |
| Institute of Sociology (2,373) |
| Institute of Sociology (CVVM) (55) |
| Technology Centre (0) |
| Institute of Analytical Chemistry (404) |
| Institute of Inorganic Chemistry (407) |
| Institute of Vertebrate Biology (487) |
| Institute of Art History (300) |
| Institute of Experimental Botany (112) |
| Institute of Experimental Medicine (128) |
| Institute of Photonics and Electronics (623) |
| J. Heyrovsky Institute of Physical Chemistry (402) |
| Institute of Physical Engineering (0) |
| Institute of Atmospheric Physics (255) |
| Institute of Physics of Materials (967) |
| Institute of Plasma Physics (539) |
| Institute of Geonics (1,207) |
| Institute of Chemical Process Fundamentals (1,776) |
| Institute of Computer Science (1,579) |
| Nuclear Physics Institute (419) |
| Institute of Macromolecular Chemistry (427) |
| Institute of Plant Molecular Biology (42) |
| Institute of Molecular Genetics (80) |
| Institute of Organic Chemistry and Biochemistry (523) |
| Institute of Czech Literature (397) |
| Institute of Electrical Engineering (0) |
| Institute of Hydrodynamics (563) |
| Institute of the Czech Language (705) |
| Institute for Classical Studies (0) |
| Institute of Contemporary History (253) |
| Institute of Scientific Instruments (1,037) |
| Institute of Soil Biology (192) |
| Institute of State and Law (148) |
| Institute of Rock Structure and Mechanics (369) |
| Institute of Theoretical and Applied Mechanics (1,091) |
| Institute of Information Theory and Automation (1,466) |
| Institute of Thermomechanics (2,882) |
| Global Change Research Institute (496) |
| Institute of Animal Physiology and Genetics (89) |
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