| Institute of Archaeology, Brno (89) |
| Institute of Archaeology, Prague (232) |
| Astronomical Institute (231) |
| Biology Centre (321) |
| Institute of Biotechnology (47) |
| Institute of Botany (379) |
| Institute of Biophysics (252) |
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| Institute of Ethnology (471) |
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| Institute of Physiology (76) |
| Institute of Geophysics (197) |
| Institute of Geology (431) |
| Institute of History (455) |
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| Library of the ASCR (66) |
| Masaryk Institute and Archives of the ASCR (469) |
| Institute of Mathematics (389) |
| Institute of Microbiology (486) |
| Economics Institute (747) |
| Oriental Institute (36) |
| Institute of Parasitology (8) |
| Institute of Psychology (312) |
| Institute of Slavonic Studies (109) |
| Institute of Sociology (2,401) |
| Institute of Sociology (CVVM) (55) |
| Technology Centre (0) |
| Institute of Analytical Chemistry (432) |
| Institute of Inorganic Chemistry (407) |
| Institute of Vertebrate Biology (487) |
| Institute of Art History (300) |
| Institute of Experimental Botany (112) |
| Institute of Experimental Medicine (129) |
| Institute of Photonics and Electronics (623) |
| J. Heyrovsky Institute of Physical Chemistry (404) |
| Institute of Physical Engineering (0) |
| Institute of Atmospheric Physics (258) |
| Institute of Physics of Materials (974) |
| Institute of Plasma Physics (566) |
| Institute of Geonics (1,217) |
| Institute of Chemical Process Fundamentals (1,862) |
| Institute of Computer Science (1,586) |
| Nuclear Physics Institute (421) |
| Institute of Macromolecular Chemistry (428) |
| Institute of Plant Molecular Biology (42) |
| Institute of Molecular Genetics (80) |
| Institute of Organic Chemistry and Biochemistry (535) |
| Institute of Czech Literature (408) |
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| Institute of Hydrodynamics (564) |
| Institute of the Czech Language (706) |
| Institute for Classical Studies (0) |
| Institute of Contemporary History (255) |
| Institute of Scientific Instruments (1,090) |
| Institute of Soil Biology (192) |
| Institute of State and Law (149) |
| Institute of Rock Structure and Mechanics (370) |
| Institute of Theoretical and Applied Mechanics (1,104) |
| Institute of Information Theory and Automation (1,479) |
| Institute of Thermomechanics (2,902) |
| Global Change Research Institute (501) |
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