| Institute of Archaeology, Brno (88) |
| Institute of Archaeology, Prague (220) |
| Astronomical Institute (214) |
| Biology Centre (284) |
| Institute of Biotechnology (46) |
| Institute of Botany (371) |
| Institute of Biophysics (252) |
| Institute of Entomology (50) |
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| Institute of Geophysics (196) |
| Institute of Geology (422) |
| Institute of History (430) |
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| Library of the ASCR (50) |
| Masaryk Institute and Archives of the ASCR (466) |
| Institute of Mathematics (365) |
| Institute of Microbiology (474) |
| Economics Institute (688) |
| Oriental Institute (36) |
| Institute of Parasitology (8) |
| Institute of Psychology (304) |
| Institute of Slavonic Studies (103) |
| Institute of Sociology (2,212) |
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| Technology Centre (0) |
| Institute of Analytical Chemistry (391) |
| Institute of Inorganic Chemistry (400) |
| Institute of Vertebrate Biology (482) |
| Institute of Art History (277) |
| Institute of Experimental Botany (112) |
| Institute of Experimental Medicine (124) |
| Institute of Photonics and Electronics (623) |
| J. Heyrovsky Institute of Physical Chemistry (380) |
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| Institute of Atmospheric Physics (247) |
| Institute of Physics of Materials (901) |
| Institute of Plasma Physics (508) |
| Institute of Geonics (1,163) |
| Institute of Chemical Process Fundamentals (1,663) |
| Institute of Computer Science (1,556) |
| Nuclear Physics Institute (380) |
| Institute of Macromolecular Chemistry (420) |
| Institute of Plant Molecular Biology (42) |
| Institute of Molecular Genetics (80) |
| Institute of Organic Chemistry and Biochemistry (516) |
| Institute of Czech Literature (378) |
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| Institute of Hydrodynamics (540) |
| Institute of the Czech Language (670) |
| Institute for Classical Studies (0) |
| Institute of Contemporary History (245) |
| Institute of Scientific Instruments (977) |
| Institute of Soil Biology (192) |
| Institute of State and Law (145) |
| Institute of Rock Structure and Mechanics (362) |
| Institute of Theoretical and Applied Mechanics (1,034) |
| Institute of Information Theory and Automation (1,437) |
| Institute of Thermomechanics (2,806) |
| Global Change Research Institute (454) |
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