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Multiparametric fluorescence spectroscopy
Lacko, Kata ; Venerová, Tereza (referee) ; Mravec, Filip (advisor)
This diploma thesis deals with the possibilities of multiparametric fluorescence spectroscopy, since the main objective of this experiment was to evaluate the possibilities of multiparametric measurements in the fluorescence spectroscopy laboratory. A suitable fluorescence probe was proposed for this type of experiment that shows high sensitivity for pH changes in the environment, SNARF-4F AM, based on a literature research. The fluorophore was dissolved in solutions of different pH and this system was examined using a time-resolved spectrofluorimeter. The method named TRES (time-resolved emission spectra) was used to obtain the emission spectra of the probe and to find the emission maximum. Fluorescence intensity decay measurements as a function of wavelengths allowed to create deconvolution of the emission spectra, which provided information about the fluorescent lifetime and the relative representation of the states of probes in the solution. Later, the probe was dissolved in solutions of different density and pH - this system served for anisotropic measurements, during which the individual correlation-rotational times of the fluorophore were obtained. The obtained results were then used as the basis for multiparametric analysis, which was performed by using a fluorescence correlation microscope and a spectrograph. This combination allows to measure the necessary fluorescence parameters in one step. A standard operating procedure was created for the spectrograph’s control. On the basis of the obtained information the suitability, accuracy and sensitivity of the multiparametric analysis were qualified.
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Phytotoxicity of selected naphthoquinones on a selected plant model
Rucký, Jakub ; Masařík,, Michal (referee) ; Provazník, Ivo (advisor)
The introductory part of this thesis is focused on the theoretical analysis of solved problems as examining the toxicity of naphthoquinones plumbagine and juglone, especially with regard to their allelopatic action. The next section is focuses on the plant stress, caused by the action of stress factors leading to their death. There is an experimental protocol and the possibilities of determination the effect of naphthoquinones on the plant model. Experimental section discusses changing growth parameters of the plant samples in different concentrations of the naphthoquinone. There is examined cell viability and changes in the synthesis of the secondary metabolites. Data obtained by using spectrophotometric and microscopic analysis are evaluated with STATISTICA software and statistical significance are plotted.
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Bigels - Preparation and Characterization
Mušková, Alexandra ; Krouská, Jitka (referee) ; Mravec, Filip (advisor)
This bachelor thesis deals with study of bigels, which are composed of hydrogel and oleogel. The aim of this work is to prepare and characterize bigels. Preparation of hydrogels was based on interaction between hyaluronan and cationic surfactant carbethopendecinium bromide. Oleogels were prepared by mixing a non-ionic surfactant (sorbitan monopalmitate) with sunflower oil. Individual bigels were prepared by mixing the various rations of hydrogel and oleogel, and were characterized using a fluorescence microscope and rheological measurements. Fluorescence observations were done on prepared samples using Nile Red, Perylene, HPTS, ATTO 655 and fluorescein. Rheological experiments show that pure oleogel is the strongest and most solid in comparison with bigels and hydrogels. The greater amount of oleogel in system is, the stronger bigel is.
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Use of selected fluorescence techniques to study of yeasts and yeast metabolites
Mikheichyk, Nadzeya ; Skoumalová, Petra (referee) ; Márová, Ivana (advisor)
The scope of thesis was the optimization of methods for the study of yeast and their metabolites using flow cytometry and fluorescence microscopy. Red yeasts are characterized by overproduction of carotenoids and lipids, which are used in food, pharmaceutical and feed industries. Currently, intensive research is being carried on to find appropriate microbiological alternatives for synthesis of these substances. Present thesis is focused on selected yeast genera: Rhodotorula, Sporobolomyces, Cystofilobasidium and strain Phaffia rhodozyma. Yeasts were cultivated on different nutrient media, in which glucose was used as a nutritional source, and also on glycerol and whey as waste material. In two strains - Cystofilobasidium macerans and Rhodotorula mucilaginosa growth characteristics were determined on a synthetic glucose production medium. All studied strains were able to use waste substrates as a source of nutrients. Some of the strains displayed increased production of carotenoids, and, additionally, in some cases also relatively high production of lipids. In classical cultivation in lipid and glucose medium supplemented with vitamins the best production characteristics displayed Rhodotorula glutinisstrain. In glycerol medium the highest amount of carotenoids and lipidic substances produced Sporobolomyces shibatanus strain. Strain Sporobolomyces roseus showed the best production characteristics on whey as the main source of carbon. The results show use of whey and glycerol seems like appropriate option for potential carbon source to cultivate carotenogenic yeasts and production of carotenoids and selected lipidic substances as products with higher added value. Further optimization of nutrient medium on the given substrates is needed for higher production of selected metabolites. Fluorescence microscopy and flow cytometry have proved to be suitable options for determination of the observed metabolites in the cells, their amount and viability.
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The penetration features of the hydrofobized hyaluronic acid – based polymeric micelles.
Mischingerová, Monika ; Pekař, Miloslav (referee) ; Muthný, Tomáš (advisor)
The aim of this thesis was to investigate the penetration features of the hydrofobized hyaluronic acid – based polymeric micelles using Nile red as carried tracer. Furthermore, to implement basic characterization of polymeric micelles for potential cosmetic applications using Coenzyme Q10 (CoQ10) as carried substance. It was found that the size of the polymeric micelles with carried CoQ10 did not exceed 100 nm. Applied delivery systems based on hydrophobic hyaluronic acid were suitable for potential topical application. Delivery systems with Nile Red as carried tracer demonstrated excellent penetration features. We assume that delivery systems with CoQ10 will exhibit similar penetration features. An issue has appeared whether the carrier breaks or proceeds along with NR to the skin. Moreover, another experiments have been designed which could also verify the penetration features of these systems.
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Characterization of PHA producing microbial cells by advanced microscopic and cytometric techniques
Dlouhá, Karolína ; Nováčková, Ivana (referee) ; Obruča, Stanislav (advisor)
The aim of this bachelor thesis is to document production of polyhydroxyalkanoates in selected bacterial strains, which were Pseudomonas thermotolerans, Chelatococcus daeguensis, Tepidiphilus thermophilus and Chelatococcus thermostellatus. In the case of the microorganisms Tepidiphilus thermophilus and Pseudomonas thermotolerans, the production of PHA´s has not yet been described, and in the Chelatococcus bacteria, which were analysed in this work, the production has not yet been documented by electron microscopy. In this work, the selected producers were analysed by flow cytometry first, using BODIPY and Nile Red as fluorescence probes. Selected producers, for which was production confirmed, were analysed by other methods, such as fluorescence microscopy, cryo scanning electron microscopy and transmission electron microscopy. In the bacterial culture of Pseudomonas thermotolerans, PHA´s production wasn´t confirmed by the first analysis by flow cytometer. For other microorganisms was production confirmed. Chelatococcus bacteria clearly proved to be better producers. Bacterial cells of Tepidiphilus thermophilus produced smaller granules and in lower amount.
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Membrane potential measurement with voltage sensitive dyes
Votavová, Barbora ; Janoušek, Oto (referee) ; Čmiel, Vratislav (advisor)
The aim of this work is to realize measurements of membrane potential with voltagesensitive dye Di-4-ANEPPS and the data processed and analyzed. The work includes theoretical basis in the form of electrophysiology animal cells, explains fluorescence and describes the fluorescence microscope. The document is largely devoted to the characterization and distribution of voltage-sensitive dyes (VSD). The practical part deals with the various components necessary to perform the experiment as a pulse generator, high-speed camera and camera’s acquisition and describes experiment. The conclusion will be compared with results from theoretical assumptions.
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Analysis of adherent cells confluency in 2D culture
Bracková, Michaela ; Čmiel, Vratislav (referee) ; Chmelíková, Larisa (advisor)
First part of this semester work dealing with the theoretical description of adherens cells, particularly structure and functions of this cells. Subsequently work is devoted to description of cell culturing, with mention of conditions which are necessary for cell culturing, following by substances which promote cell growth. Last part of theoretical research is concern with microscopy technique that is suitable for studying of adherent cells. Subsequently it is about fluorescence and confocal microscopes. Practical part dealing with cell culturing of adherent cells and the evaluation of realized experiments.
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Microplastics in solid matrices of the environment
Pospíchalová, Eliška ; Cajthaml, Tomáš (advisor) ; Innemanová, Petra (referee)
Microplastics, plastic particles of 5 mm-1 nm in size, are now widespread across different ecosystems. The increasing amount of microplastic contamination of aquatic and terrestrial environments requires the development of standardized methods for their separation and analysis. One of the main vectors of microplastic input to terrestrial ecosystems is through sewage sludge. The sludge is recycled for fertilization and reclamation due to its high organic matter content. Scientists have already been able to quantify and identify a range of microplastics in sewage sludge of different sizes, polymer types, shapes, etc. This thesis focuses on the optimization of existing methodologies to extract microplastics from solid environmental samples and their subsequent qualitative and quantitative analysis. The steps required for sample pre-treatment prior to analysis, namely reduction in organic matter content by the Fenton reaction process and density-based separation of microplastics by flotation in saturated NaI solution (1.8 g/cm3 ) using centrifugation, were optimized. Microplastics in size fractions of 20-40 μm and 150-300 μm were fabricated and introduced into flotation and total recovery experiments of the methodology to determine the recovery. Fluorescence microscopy was chosen for quantitative...
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Membrane microdomains in regulation of lipid metabolism
Veselá, Petra ; Malínský, Jan (advisor) ; Hašek, Jiří (referee) ; Zimmermannová, Olga (referee)
The fluid mosaic model described by Singer and Nicolson in 1972 was timeless and remains relevant to understanding the structure, function and dynamics of biological membranes more than fifty years later. From the outset, its authors acknowledged the existence of lateral membrane regions that differ in composition and biological function from their immediate surroundings. Therefore, even contemporary studies demonstrating the existence of many different membrane microdomains do not pose a fundamental challenge to the validity of this model. In particular, research over the last twenty years has shown that a number of cellular processes (nutrient transport, signaling, regulation of nucleic acid metabolism, lipophagy and many others) are linked to membrane microdomains. However, the molecular details of these links remain hidden in many cases. The aim of this work is to find specific links between membrane microdomains and the metabolism of selected lipids. Using the yeast model S. cerevisiae, we document the connection of a specialized plasma membrane microdomain, the membrane compartment of arginine permease Can1 (MCC), to the metabolism of sphingolipids and the mitochondrial anionic phospholipids, phosphatidylglycerol (PG) and cardiolipin (CL). The initial two chapters deal with the elucidation of...
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