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A modern approach to measuring antibiotic susceptibility of microbial cultures using machine learning
Lepík, Jakub ; Burget, Radim (referee) ; Čičatka, Michal (advisor)
The bachelor's thesis focuses on antibiotic susceptibility testing (AST), specifically enhancing and automating the assessment of the disk diffusion method using machine learning and object detection architectures. Thanks to the TensorFlow development platform and extensive dataset, on which custom detection models like EfficientDet were trained, processing a wide range of input data is enabled. This brings the possibility of using mobile devices alongside traditional laboratory equipment when evaluating this method. By employing additional image processing techniques and the OpenCV library, a custom algorithm for measuring the size of inhibitory zones was developed, which, along with the detection models, is integrated within the application module developed by Bruker Daltonics GmbH & Co. KG. This module, created using the ASP.NET platform, is a precise and valuable tool for assisting personnel in microbiological laboratories.
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Detekce karet při turnajích v pokru
Kovalets, Vladyslav ; Šilling, Petr (referee) ; Vaško, Marek (advisor)
This bachelor's thesis focuses on the development of an advanced system for automatic recognition and registration of playing cards from video recordings of poker games. The technology of convolutional neural networks, specifically the YOLO network, was chosen as the basic tool. It enables effective identification of cards on the table and in the hands of players even under challenging conditions. The work involved creating an extensive dataset for training and testing the card detector, which achieved a recognition accuracy of 98.7%. An algorithm was designed to minimize detector errors and improve the overall accuracy of the system. The results of the study suggest that the developed system has potential for use in practice.
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Atrial fibrillation localization for burden assessment
Martinásková, Klára ; Ředina, Richard (referee) ; Filipenská, Marina (advisor)
The diploma thesis deals with the problem of detection of atrial fibrillation from ECG recordings and localization of given fibrillation segments in signals with paroxysmal fibrillation. A research is done on atrial fibrillation, the origin of this pathology and methods of fibrillation detection from ECG recordings using deep learning. Subsequently, a convolutional neural network model with residual blocks is implemented in Python to classify short (3 s) segments of the ECG signal. Subsequently, the classification results are processed and the segments with paroxysmal fibrillation are localized in the signals with fibrillation. With the classification and localization, the burden assessment of fibrillation is further evaluated. The implemented classifier on the test set achieves an F1 score of 96,15 %. When the sections with fibrillation are localized by the algorithm, MAE of 0,95 s for detecting the beginnings and 1,29 s for detecting the ends with respect to the reference positions is achieved. The estimated patient's burden assessment is compared with the actual values and achieves MAE of 3 %
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Segmentation of hyperspectral images of lizards
Kotrys, Kryštof ; Parák, Roman (referee) ; Škrabánek, Pavel (advisor)
Tato diplomová práce se zaměřuje na tvorbu systému pro segmentaci hyperspektrálních fotografií ještěrek žijících na území České republiky. První část práce obsahuje shrnutí existujících metod segmentace obrazu, informací o hyperspektrálním obrazu a konvolučních neuronových sítí. Druhá část práce navrhuje postup pro zpracování dat, které vede k tvorbě segmentovaných masek pro zadanou datovou množinu a také prezentuje získané výsledky.
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Object Detection on the i.MX RT Microcontroller
Kravchuk, Marina ; Rozman, Jaroslav (referee) ; Janoušek, Vladimír (advisor)
This work focuses on the use of machine learning, particularly convolutional neural networks, in industrial applications. The course of work involves investigating the implementation of these networks directly on embedded devices, specifically NXP i.MX RT microcontrollers. During the course of the study, materials related to the training and use of neural networks and their optimization for deployment on low power devices were reviewed. Several neural network models were trained and tested, the best of which was used in the final version of the application. The application itself is divided into two parts: one part is written in C/C++ in the MCUXpresso IDE, where the main functionality of the program is implemented, while the other part of the work, i.e. the creation of a graphical user interface to control the program, is done in Python. The result is a functional application for the MIMXRT1170-EVK microcontroller that is able to detect and recognize small colored objects of certain shapes from a predefined data set.
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Mobile Application for Scanning Nonograms and Solving It
Zobaník, Michal ; Pánek, Richard (referee) ; Dyk, Tomáš (advisor)
The goal of this bachelor thesis is to create mobile application for scanning nonograms from newspapers or magazines and allows its solving. The thesis describes the design of the application, its functionality and important parts of implementation. Image processing methods are used for detection of the nonogram. Number recognition is realized by created and trained convolutional network. Scanned nonograms are solved by using several logical rules and backtracking.
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Rozpoznávání nemocí rostlin pomocí umělé inteligence
Juliš, Adam ; Kubík, Tibor (referee) ; Bažout, David (advisor)
The aim of this work was to investigate the possibility of plant disease detection in the ab- sence of training data. The possibility of extracting the pattern of each disease and apply- ing these patterns to unknown plants was investigated. While still in the theoretical part of the thesis, this approach was found to be flawed. Furthermore, datasets with images of plant pathogens were analyzed and compared. An augmented image generator and several models were created over a smaller dataset validating existing approaches
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Enhancing Reliability and Benchmarking Performance of Agar Plate Handling Algorithms for Laboratory Automation Robots
Kalivodová, Tereza ; Nohel, Michal (referee) ; Mézl, Martin (advisor)
Tato bakalářská práce zkoumá problematiku vzorkové přípravy v oblasti mikrobiologie a lékařské diagnostiky s důrazem na automatizovaný robotický systém MBT Pathfinder, vyvinutý firmou \bruker. S využitím digitálních obrazových technik a konvolučních neuronových sítí se práce zaměřuje na zdokonalení algoritmu pro identifikaci pozice mikrobiálních kolonií v systému MBT Pathfinder. Praktická část práce prezentuje inovativní přístupy k optimalizaci kritických kroků vzorkové přípravy s cílem eliminovat chyby a zvýšit efektivitu procesu. Výsledky této práce mohou posílit spolehlivost mikrobiologických analýz v oblasti lékařské diagnostiky a mikrobiologického výzkumu.
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Application of deep learning in sleep apnea detection
Láznička, Jakub ; Šaclová, Lucie (referee) ; Králík, Martin (advisor)
The master thesis focuses on the use of deep learning methods for the detection of sleep apnea, a sleep disorder characterized by repeated episodes of cessation or significant reduction in airway flow during sleep. The study investigates the effectiveness of Convolutional Neural Networks (CNN) and Bidirectional Long Short-Term Memory (BiLSTM) models in the automatic detection of different types of sleep apnea using polysomnographic recordings. The datasets used in this work are from the MESA database, which have been specially prepared and modified for deep learning. The best performing models achieved F1-scores of 0.87 and 0.83, showing that deep learning can provide accurate tools for sleep apnea diagnosis, representing a potential improvement in clinical practice. The paper also discusses the possibilities of integrating these models into clinical diagnostic processes and outlines directions for future research in this area.
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DEEP LEARNING FOR SINGLE-VOXEL AND MULTIDIMENSIONAL MR-SPECTROSCOPIC SIGNAL QUANTIFICATION, AND ITS COMPARISON WITH NONLINEAR LEAST-SQUARES FITTING
Shamaei, Amirmohammad ; Latta,, Peter (referee) ; Kozubek, Michal (referee) ; Jiřík, Radovan (advisor)
Pro získání koncentrace metabolitů ve vyšetřované tkáni ze signálů magnetické rezonanční spektroskopie (MRS) je nezbytné provézt předzpracování, analýzu a kvantifikaci MRS signálu. Rychlý, přesný a účinný proces zpracování (předzpracování, analýza a kvantifikace) MRS dat je však náročný. Tato práce představuje nové přístupy pro předzpracování, analýzu a kvantifikaci MRS dat založené na hlubokém učení (DL). Navržené metody potvrdily schopnost použití DL pro robustní předzpracování dat, rychlou a efektivní kvantifikaci MR spekter, odhad koncentrací metabolitů in vivo a odhad nejistoty kvantifikace. Navržené přístupy výrazně zlepšily rychlost předzpracování a kvantifikace MRS signálu a prokázaly možnost použití DL bez učitele. Z hlediska přesnosti byly získány výsledky srovnatelné s tradičními metodami. Dále byl zaveden standardní formát dat, který usnadňuje sdílení dat mezi výzkumnými skupinami pro aplikace umělé inteligence. Výsledky této studie naznačují, že navrhované přístupy založené na DL mají potenciál zlepšit přesnost a efektivitu zpracování MRS dat pro lékařskou diagnostiku. Disertační práce je rozdělena do čtyř částí: úvodu, přehledu současného stavu výzkumu, shrnutí cílů a úkolů a souboru publikací, které představují autorův přínos v oblasti aplikací DL v MRS.
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