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Taxonomy, phylogeny and phylogeografy of selected groups of aquatic beetles (Coleoptera: Hydrophilidae, Hydraenidae) of the Caribbean region
Deler-Hernández, Albert ; Fikáček, Martin (advisor) ; Ribera, Ignacio (referee) ; Archangelsky, Miguel (referee)
This thesis is focused in the representatives of beetle families Hydrophilidae and Hydraenidae of West Indies and adjacent regions. It consists of two parts, the phylogenetic part and the systematic part. The phylogenetic part focuses on the hydrophilid genera Phaenonotum and Crenitulus of Greater Antilles: beetles were sampled in all four main islands (Cuba, Hispaniola, Puerto Rico and Jamaica) and analyzed using the combination of molecular and morphological data. The genus Phaenonotum contains four single-island endemics, of which those from Cuba, Jamaica and Hispaniola are wingless and form a clade that diversified ca. 46 million years ago (Ma) and likely colonized the Caribbean via the GAARlandia land bridge. In contrast, the Puerto Rican endemic and the two remaining non-endemic species colonized the Greater Antilles by over- water dispersal during the Oligocene-Miocene. The analysis of the genus Crenitulus revealed that Greater Antillean species belong to two separate clades: the Crenitulus yunque clade endemic for Cuba and Hispaniola, and the Crenitulus suturalis clade containing specimens from Greater Antilles and from northern America. A detailed revision of the Crenitulus yunque clade using morphology and molecular-based species delimitation recognized 11 species locally endemic for...
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Evolutionary relationships within genus Barbus (Cyprinidae) with emphasis on Greece, and biogeography of Greek lineages
Kyralová, Eva ; Vukićová, Jasna (advisor) ; Kalous, Lukáš (referee)
Evolutionary relationships between Barbus species have been already studied in the past, but most of the studies were based only on mitochondrial DNA, there is no detailed study based on nuclear markers. This is mainly due to the fact that Barbus species are tetraploid. The western part of Greece has been studied insufficiently, and moreover a greater diversity of freshwater ichthyofauna is expected here. Greece is one of the hotspots of biodiversity. Greek river system is characterized by a significant proportion of endemic species of freshwater fishes. In this work evolutionary relationships between Barbus species were studied, with focus on diversity of Greek lineages. The geographical distribution of Barbus species has been also revised. In total, 192 individuals were analyzed, 156 individuals were from 40 Greek localities and another 36 Barbus species were from other areas of distribution of the genus. Dataset was supplemented with avaible published sequences. For the phylogenetic analysis mitochondrial gene cytochrom b, 1st intron of ribosomal protein gene S7 and 2nd intron of gene beta-actin were used. For both nuclear markers paralog-specific primers were used. The analysis of cytochrom b revealed several well-supported lines: 1. species of southwestern Mediterranean (B. meridionalis and B....
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Historical record of the fairyshrimp Branchinecta gaini in the James Ross archipelago, and its phylogeography
Pokorný, Matěj ; Sacherová, Veronika (advisor) ; Janko, Karel (referee)
The Fairy shrimp Branchinecta gaini Daday, 1910 is the largest freshwater invertebrate in Antarctica and the top-level consumer of local freshwater food webs. Ecological demands of B. gaini that are accompanied by 'ruderal' life strategy together with its spatial distribution that exceeds to Patagonia indicate that it had survived last glacial period in South America and expanded to Antarctica shortly after this epoch endeed. On James Ross Island that is the most extreme environment where B. gaini occurs today was this fairy shrimp considered extinct until year 2008. Its disappearance was based on paleolimnological analysis of several lake sediment cores according to which it inhabited this island between years 4200 to approximately 1500 before present when it died out because of changes in lake catchments caused by harsh neoglacial conditions. Paleolimnological analysis of Monolith Lake presented in this study has shown that this assumption was wrong and B. gaini has lived on James Ross Island throughout neoglacial period up to recent time. Phylogeographic analysis of 16S rDNA of specimens from Patagonia, South Orkneys, South Shetlands and James Ross Island revealed that its high morphological diversity is not supported by this gene and that all examined populations of B. gaini is one species with very few...
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Phylogeny and phylogeography of the cyprinid fish genus Pelasgus (Teleostei: Cyprinidae)
Viñuela Rodríguez, Nuria ; Vukićová, Jasna (advisor) ; Rovatsos, Michail (referee)
The genus Pelasgus (Cyprinidae) is endemic to the southern part of the Balkan Peninsula and includes seven species. In this work, a multilocus approach has been applied to study phylogenetic relationships between the species and their populations and to revise their distribution areas. 180 specimens from 47 localities from 30 river drainages were analyzed, comprehensively covering the distribution range of the genus. Moreover, samples from type localities of all species were included in the analyses. Mitochondrial (cytochrome b) and nuclear markers (the first intron of ribosomal protein S7, recombination activating gene RAG1 and rhodopsin) were used. Existence of seven well supported lineages was revealed based on cytochrome b, which is the most variable marker. These lineages correspond to P. laconicus, P. marathonicus, P. minutus, P. stymphalicus, P. thesproticus, P. prespensis and Pelasgus sp. The most variable nuclear marker was first intron of S7, which provides almost the same results as cytochrome b, revealing six well supported lineages, whereas RAG1 and rhodopsin appear to be less informative, revealing only four well supported clades. These markers did not separate several species (P. marathonicus, P. stymphalicus, P. thesproticus, and Pelasgus sp.) due to low variability of the markers...
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Changes in vegetation of Karpaty since glacial maximum - identificaition of main trends accesibility of data and gap in knowledge
Beranová, Jana ; Kuneš, Petr (advisor) ; Jamrichová, Eva (referee)
The Carpathian Mountains are great range in Europe. This rewiew is target to identify main evolution trends of vegetation i Carptahian Mountatins. I studied materials whitch was concetrate to pollen analysis and malacological finds. Based on this materials I found that in the stadial dryas periods there were climatic conditions for small forrest islands mainly formed from genus Pinus and Larix. In the interstadial periods the different climatic conditions permit forrest propagation and became denser. Transitions from pleistocen to holocen was nearly similar to the situation in interstadial period. But later in the holocene the density of the forest is growing more and dominant of late glacial forest was replaced mainly by the spurce. Population of plants that survive the glacial in the Carpathian mountain growing as same as and new species that survived glacial in warmer localities. In the subatlantic and especially in the few last decade the human efect is important and can be found in the pollen analysis. On the research of plant evolution in Carpathian mountain is necessary to continue, mainly on identification and analysis new localities. This large area is unequaly covered by localities.
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Spreading of praying mantis (Mantis religiosa) in Europe
Vitáček, Jakub ; Janšta, Petr (advisor) ; Gvoždík, Václav (referee)
Climate change is one of the most important factor determining species ranges. In Europe there is now evidence for northward areal expansion in many Mediterranean insects including the praying mantis (Mantis religiosa). This species is the only representative of the order Mantodea inhabiting central Europe. The northern edge of the species distribution currently reaches latitude 53ř North. Although, the praying mantis is well known insect there is not enough evidence about its phylogeography. In this work three mitochondrial genes (COI, COII, Cyt b) were selected for phylogenetic study. Results indicate three statistically supported distinct lineages in Europe: Eastern European, Central European and Western European. Presumably these lineages are consistent with isolation during the last glacial and re-colonization from glacial refugia. Reduced haplotype diversity on the northern edge suggests currently established populations at the northern distribution border. To validate mtDNA results it was also considered four microsatellite loci. Due to different type of inheritance mtDNA and nuclear DNA it is possible to compare two independent genetic datasets. Microsatellite analysis confirmed results obtained on mitochondrial data. Three major genetic clusters were found: east, west and central. Spatial...
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Systematics and phylogeography of diploid lineages of Arabidopsis arenosa complex
Hyklová, Lucie ; Záveská, Eliška (advisor) ; Krak, Karol (referee)
The Arabidopsis arenosa species complex is closely related to the model species Arabidopsis thaliana. Distribution range of the diploid lineage covers most parts of Central and South-eastern Europe with a remarkable diversity of ecological niches from sea level to alpine peaks. There is still little known about genetic relationships among the diploid populations of A. arenosa. The evolutionary history of the diploid cytotype across its entire range was explored by using 14 nuclear microsatellite loci. Five lineages occupying biogeographically distinct regions were identified in Arabidopsis arenosa complex. These lineages were labelled as Western Carpathians, Eastern Carpathians, Pannonian Lowland, Dinaric Alps and Baltic Shore (according to geographical regions where these lineages occur). Powered by TCPDF (www.tcpdf.org)
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Evolution of host specificity and phylogeography of Strepsiptera parsites of the family Xenidae
Benda, Daniel ; Straka, Jakub (advisor) ; Malenovský, Igor (referee)
The twisted-wing parasites (Strepsiptera) are an endoparasitic order of insects with cosmopolitan distribution, which are sister group of Coleoptera. There are about 600 known species up to date. Strepsiptera parasitize seven insect orders (Thysanura, Orthoptera, Blattodea, Mantodea, Hemiptera, Diptera, Hymenoptera). The family Xenidae is one of the most derived groups of Strepsiptera. Its representatives parasitize aculeate Hymenoptera of three families (Vespidae, Sphecidae, Crabronidae). In comparison to the basal groups, there are well-known hosts for genera of the family Xenidae. Therefore, this group is suitable object for study of the evolution of host specialization. Phylogeny of the family Xenidae was constructed on the basis of molecular analysis of three genes. Moreover, the mapping of ancestral host major groups and biogeographic areas was performed using two methods (parsimony, maximum likelihood). According to the results, the family Xenidae is monophyletic group with Old World origin. There were a several independent switches to the same host groups. This significantly changes the existing ideas about evolution of host specialization and requires a taxonomic revision. Within the family Xenidae, there were several cases of dispersal between the Old World and the New World. Furthermore,...
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The role of northern refugia in Europe phylogeograpy
Benešová, Markéta ; Hulva, Pavel (advisor) ; Janko, Karel (referee)
Changeover between glacials and interglacial period singificantly affects species distribution for hundreds thousands years. Along with the traditional conception species distribution was restricted to refugia in southern Europe during glacials, Mediterrain, from where they recolonized northern parts of ranges after deglaciation. However, according to new findings many species could have had refugia to the north from this classical refugia, in central Europe. Northern refugia were often located in proximity of mountain systems or in rock massifs. Some species are, however, so adaptable that their dispersal was continuous even during ice ages to the north from southern refugia and they were able to live in cold regions. Even cold-adapted species contract to refugia, but instead of glacials their distribution is restricted during interglacial periods. Their ranges either contract to the north of Europe or undergo altitudinal shifts. Species can have refugia also in accordance with the gradient of oceanic-continental climate. In above mentioned types of refugia, complicated demographic processed connected with decreasing population size could take place, often resulting in speciation process.
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Evolutionary history of Parnassiinae
Kaman, Ondřej ; Čepička, Ivan (advisor) ; Král, David (referee)
This review is devoted to the evolutionary history of the Parnassiinae subfamily of the family Papilionidae and particularly to the nominate genus Parnassius which is the main group among the eight extant Parnassiinae genera. At first, the taxonomic concept, monophyly, and phylogenetic position of Parnassiinae are thoroughly discussed. It is shown that all its genera form three clades that are currently classified as tribes. Further, the estimated time of the divergence of Parnassiinae is given together with the description of all fossil taxa. The subsequent part is entirely focused on Parnassius whose internal phylogeny largely corroborates the traditional classification on eight subgenera, although the phylogenetic relationships among these clades remain mostly unresolved. All the clades are systematically discussed and interesting phylogenetic cases of species complexes and closely related taxa are analysed and supplemented by taxonomic remarks. The last three chapters are dedicated to the phylogeography of P. mnemosyne, P. apollo, and P. phoebus complex. Their evolutionary history is discussed in relation to glacial events in Pleistocene and warming of the climate in Holocene. The whole treatment attempts to integrate morphological, molecular, and biogeographical views together in order to provide a...
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