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Numerical simulation of cerebrospinal fluid transport
Žáček, Petr ; Maršík, František (advisor) ; Otáhal, Jakub (referee)
Modelling of cerebrospinal fluid flow is important for understanding its influence on central nervous system, especially spinal cord. One of the reasons for its study is a disease called syringomyelia that probably develops as a result of severance of neural pathways by bubbles emerging during the propagation of pressure (expan- sion) disturbances through spinal cord and its surroundings. It is characterized by fluid-filled cavities in spinal cord. In this thesis, a model of fluid-filled co-axial elastic tubes is proposed that can help us simulate pressure disturbances propa- gation through spinal cord including its interactions and possible increase as the result of interferences or reflection. We derive quasi-one-dimensional governing equations in the form of nonlinear hyperbolic system of conservational laws and with its numerical solution by two-step Lax-Wendroff method with added artifi- cial viscosity we can quantitatively estimate almost twofold increase of pressure difference. 1
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Diagnostics of neurodegenerative diseases by means of Raman spectroscopy
Klener, Jakub ; Kopecký, Vladimír (advisor) ; Matějka, Pavel (referee)
Therapies of neurodegenerative diseases are often very difficult and their success depend on an early diagnose. From that reason we have been developing new diagnostic method for multiple sclerosis and Alzheimer disease by drop coating deposition Raman (DCDR) spectroscopy of cerebrospinal fluid (CSF) in this work. We found out conditions of measurements, where spectra were reproducible and accepted for standard diagnostic practices. We discovered that CSF has fast degradation at a room temperature, which was detectable in spectra after 5 hours, and degradation due to refreezing. DCDR spectra of CSF from individual patients were analyzed by factor and cluster analysis. Multiple sclerosis was manifested by lower intensity of a Raman band at 1080 cm−1 , which is probably connected with more general pathologic state. Spectral changes caused by Alzeheimer disease were more complex and beside changes mentioned above also changes connected with composition and conformation of proteins were identified in regions 1200-1800 cm−1 and 2870-2950 cm−1 . Additionally, we succeeded in distinguishing of young healthy patients from older patients in DCDR spectra. In this work were checked up, that DCDR is good diagnostic method for clinical practices for determining neurodegenerative diseases through the complex...
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Segmentation of the basic parts of human brain in MR data
Klásek, Pavel ; Jiřík, Radovan (referee) ; Malínský, Miloš (advisor)
This work describes segmentation methods used in image data processing, from which there are selected and implemented suitable methods for solving the assignment of segmentation parts of human brain – region growing and watershed algorithm. Segmentation techniques are realized on real data sources. Final segmentation results are presented, compared and evaluated accordig to the advanced software FreeSurfer segmentation results. In addition there is a list of available software that can be applied for the purpose of neurological image segmentation.
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