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Genetic Programming in Prediction Tasks
Machač, Michal ; Mrázek, Vojtěch (referee) ; Sekanina, Lukáš (advisor)
This thesis introduces various machine learning algorithms which can be used in prediction tasks based on regression. Tree genetic programming and linear genetic programming are explained more thoroughly. Selected machine learning algorithms (linear regression, random forest, multilayer perceptron and tree genetic programming) are compared on publicly available datasets with the use of scikit-learn and gplearn libraries. A core part of this project is a new implementation of linear genetic programming which was developed in C++, tested on common symbolic regression problems and then evaluated on real datasets. Results obtained with the proposed system are compared with the results obtained with gplearn.
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Machine Learning as a Tool for the Prediction of the Effect of Mutations on Protein Stability
Dúbrava, Juraj Ondrej ; Martínek, Tomáš (referee) ; Musil, Miloš (advisor)
The main focus of this thesis is the prediction of the effect of amino acid substitutions on protein stability. My goal was to develop a predictive tool for the classification of the effect of mutations by combining several machine learning techniques. The implemented predictor, which utilizes SVM and Random forest methods, has achieved higher accuracy than any of the integrated methods. The novel predictive tool was compared with the existing ones using independent testing dataset. The predictor has yield 67 % accuracy and MCC 0,3.
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Segmentation of MR images using machine learning algorithms
Dorazil, Jan ; Mikulka, Jan (referee) ; Dvořák, Pavel (advisor)
This thesis concerns with magnetic resonance image segmentation using Random Forests algorithm. Employed technologies accomplishing the specified task include C++ progra- mming language with libraries ITK and OpenCV. This work descibes the technique of processing images from loading through preprocessing to the actual segmentation. The outcome from this work is a programme that automatically segmentates MR images of mouse’s head to the brain and the surroundings.
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Object Detection on GPU
Jurák, Martin ; Hradiš, Michal (referee) ; Juránek, Roman (advisor)
This thesis is focused on the acceleration of Random Forest object detection in an image. Random Forest detector is an ensemble of independently evaluated random decision trees. This feature can be used to acceleration on graphics unit. Development and increasing performance of graphics processing units allow the use of GPU for general-purpose computing (GPGPU). The goal of this thesis is describe how to implement Random Forest method on GPU with OpenCL standard.
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ECG based human authentication and identification
Waloszek, Vojtěch ; Smital, Lukáš (referee) ; Vítek, Martin (advisor)
In the past years, utilization of ECG for verification and identification in biometry is investigated. The topic is investigated in this thesis. Recordings from ECG ID database from PhysioNet and our own ECG recordings recorded using Apple Watch 4 are used for training and testing this method. Many of the existing methods have proven the possibility of using ECG for biometry, however they were using clinical ECG devices. This thesis investigates using recordings from wearable devices, specifically smart watch. 16 features are extracted from ECG recordings and a random forest classifier is used for verification and identification. The features include time intervals between fiducial points, voltage difference between fiducial points and PR intervals variability in a recording. The average performance of verification model of 14 people is TRR 96,19 %, TAR 84,25 %.
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Data Analysis of a Company Producing Medical Supplies
Kulhánková, Monika ; Bartík, Vladimír (referee) ; Burgetová, Ivana (advisor)
This bachelor's thesis deals with the analysis of the company's sales data, specifically the classification of the customer's type according to his sales data. It provides a theoretical introduction to data mining. It describes the classification process and methods for creating classifiers and presents the CRISP-DM model. This thesis describes the provided data sets, from which the relevant attributes are selected. The data are preprocessed and used in the creation and testing of classification models. The result of this thesis is a comparison of the achieved results.
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Classification of glioma grading in brain MRI
Olešová, Kristína ; Mézl, Martin (referee) ; Chmelík, Jiří (advisor)
This thesis deals with a classification of glioma grade in high and low aggressive tumours and overall survival prediction based on magnetic resonance imaging. Data used in this work is from BRATS challenge 2019 and each set contains information from 4 weighting sequences of MRI. Thesis is implemented in PYTHON programming language and Jupyter Notebooks environment. Software PyRadiomics is used for calculation of image features. Goal of this work is to determine best tumour region and weighting sequence for calculation of image features and consequently select set of features that are the best ones for classification of tumour grade and survival prediction. Part of thesis is dedicated to survival prediction using set of statistical tests, specifically Cox regression
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Novel methods for sleep analysis and classification
Navrátilová, Markéta ; Ronzhina, Marina (referee) ; Kolářová, Jana (advisor)
Tato diplomová práce se zabývá metodami pro analýzu a klasifikaci spánku. Popisuje jakjednotlivé spánkové fáze a vzorce biosignálů v průběhu spánku, tak metody pro klasifi-kaci. Příznaky jsou extrahovány na dodaných biosignálech ECG, EDA a RIP. Na základětěchto příznaků jsou klasifikovány jednotlivé spánkové fáze s využitím klasifikátoru ná-hodný les. Parametry klasifikátoru jsou optimalizovány a následně jsou vyhodnocenydosažené výsledky. Pomocí metod pro redukci dimenzionality je soubor příznaků analy-zován a výsledky jsou porovnány s výsledky ze standardní klasifikace. Řešení pro vizuali-zaci jak samotných nezpracovaných signálů, tak extrahovaných příznaků je navrhnuto aimplementováno. Dosažené výsledky jsou porovnány s publikovanými metodami.
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How climate change affects biotopes protected under Natura 2000 in southern Bohemia?
Vaškovský, Adam ; Křenová, Zdeňka (advisor) ; Trnka, Miroslav (referee)
Warnings of the intensity and widespread negative impacts of ongoing climate change are becoming more urgent. EU countries have created a unique network Natura 2000 to protect Europe's biodiversity and are legally obliged to protect the sites so that their conservation targets do not deteriorate. The key question is whether the static Natura 2000 system will continue to fulfil its purpose in the future, or whether climate change will lead to significant losses of European biodiversity. To date, there are still very few studies that address the modelling of climate change impacts on Natura 2000 sites. In this paper, using a new method combining climate envelope models with procedures applied to assess climate change risks to agroecosystems, I assessed the impact of climate change on eight selected natural habitat types (NHTs) occurring in south Bohemia. Agroclimatological indicators generated by the AgriClim model were used as predictors of the occurrence of suitable climate for NHTs. For modelling, I used three machine learning algorithms (generalized additive model, artificial neural network and random forest) and two ensemble learning techniques (averaging and stacking), of which I chose random forest as the most suitable for the resulting predictions. The modelling results show that for the...
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Nowcasting the Real GDP Growth of the European Economies based on Machine Learning
Baylan, Su Hazal ; Kočenda, Evžen (advisor) ; Baruník, Jozef (referee)
This thesis analyzes the nowcasting of quarterly GDP growth for nine European economies using a dynamic factor model and four different machine learning models. These machine learning models are as follows: Ridge, Lasso, Elastic Net, and Random Forest. The data includes ten hard and fifteen soft indicators for each country in order to calculate GDP for each nowcasting iteration for pre-covid and covid periods. For machine learning, models are fed with the extracted factors that are obtained from the dynamic factor model, and for all nowcasting models expanding window approach is selected to estimate nowcasting iterations. The empirical finding indicates that overall machine learning models provide better forecasting accuracy compared to dynamic factor models and benchmark models for more stable periods, such as the period before Covid-19. On the other hand, for more volatile periods where the uncertainties are higher in economies, the dynamic factor model outperforms machine learning models in order to nowcast GDP growth. In addition to this, Random Forest is able to outperform all the alternative models for small economies such as Slovenia and Portugal for stable periods. JEL Classification C01, C33, C53, C83, E37 Keywords Nowcasting, DFM, Ridge, Lasso, Elastic Net, Random Forest Title Nowcasting...
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