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Optimization of extraction of pigments from yeast and algae cells
Šimanský, Samuel ; Mikulíková, Renata (referee) ; Márová, Ivana (advisor)
The presented diploma thesis deals with the extraction and storage stability of lipophilic pigments produced by selected strains of yeasts and algae. In this thesis, there was studied the influence of the selected solvents on the efficiency of extraction, as well as the effect of ambient temperature on the stability of the pigments during storage. The work is divided into two main parts, theoretical and practical part. In the theoretical part knowledge about algae, yeasts and their cultivation parameters is summarized. Furthermore, some information regarding the selected lipid metabolites, their properties and possibilities of application in various branches of industry is mentioned. The practical part deals with the preparation of extracts and stability tests. Extracts were prepared from selected biomass samples in solvents suitable for applications in food industry or cosmetics (ethanol and hexane). Subsequently, the long-term stability tests lasting 4 months and short-term stability tests lasting a total of 28 days were performed on these extracts. The pigments were determined by HPLC and spectrophotometrically, the fatty acid content was determined by GC. For the extraction of pigments from biomass, in the most cases ethanol appears to be the optimal solvent. However, for lipid extraction from biomass, hexane appears to be the optimal solvent for a significant number of samples. In most samples, storage in the freezer showed the most favourable effect on pigment stability, but some samples showed comparable stability even when stored in the refrigerator.
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Characterization of carotenogenic yeasts using molecular techniques
Kostovová, Iveta ; Čarnecká, Martina (referee) ; Márová, Ivana (advisor)
The aim of this master’s thesis was focused on characterization of carotenogenic yeast using molecular techniques. For this usage, interspecific variables of strongly conserved sequences of genomic DNA, especially rDNA D1/D2 large ribosomal subunit and ITS1 and 5,8-ITS2 rDNA regions were amplified. These sequences were subjected analysed by DGGE method, which approved differences of S. roseus in all analyzed rDNA sequencies compared to the other analyzed carotenogenic yeasts. Parameters of PFGE and isolation procedure of the intact DNA were optimized for caryotypic yeast characterization. At all, nine of carotenogenic yeast strains Rhodotorula, Sporobolomy-ces, Cystofilobasidium a Phaffia were analyzed by this techniques. Further part of this thesis was focused to application of molecular methods to analysis of region D1/D2 of large ribosomal subunit in mutant carotenogenic yeast strains. Mutant strains were pre-viously adapted to waste substrates - pasta and glycerol, and stability of their production properties was verified.
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Production of selected metabolites by yeasts and algae cultivated under stress conditions
Mariničová, Veronika ; Kočí, Radka (referee) ; Márová, Ivana (advisor)
The presented work was focused on the comparison between the production of selected metabolites by carotenogenic yeasts and microalgae cultivated under conditions of external stress. The main metabolites of interest were carotenoids, further lipophilic substances and lipids. Biotechnological overproduction of these metabolites could serve as a source of potentially beneficial substances not only for the pharmaceutical, cosmetic and food industries, but also for the production of third generation biofuels. Recently, there has been a growing interest in biofuels primarily from microalgae, which have a high potential in biofuel production and seem to be a promising source. The theoretical part deals with the description of individual genera of carotenogenic yeasts, microalgae, cyanobacteria, chemical composition of produced metabolites and brief biosynthesis. In addition, individual methods for analyzing the production of the metabolites of interest were described. The experimental part is focused on the comparison of production of carotenoids, coenzyme Q, ergosterols (phytosterols) and lipids by yeasts, microalgae and cyanobacteria. As a source of external stress, temperature, salt and light stress were chosen. The strains of Rhodotorula glutinis, Rhodotorula mucilaginosa, Sporidiobolus pararoseus and Cystofilobasidium macerans were studied from the yeast strains. Microalgae and cyanobacteria were Scenedesmus obliqus, Scenedesmus dimorphus, Chlorella sorokiniana, Chlorella saccharophila, Botryococcus brauni, Synechococcus nidulans and Arthrospira maxima. The yeast and algal strains were optimized for growth, carotenoid and lipid production. Applied salt stress showed a significant liquidation effect on algal and cyanobacterial strains. The thesis also monitored the biological stress, so-called co-cultivation of microalgae and yeasts. Further experiments will be the subject of future work.
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Cultivation of microalgae and carotenogenic yeasts under stress conditions
Sniegoňová, Pavlína ; Skoumalová, Petra (referee) ; Szotkowski, Martin (advisor)
In biotechnological industry we can register greater use of microorganisms like microalgae and carotenogenic yeast for production of selected substances or for valorisation of waste materials. Among metabolites produced by these microorganisms are carotenoids, which are natural pigments with antioxidant and other biological effects. Other significant produced substances are lipids, which represent large range of substances in living organisms. They form cellular membranes and serve as a reservoir of energy. These substances can be used in food, cosmetic and pharmaceutical industry and also in production of biofuels. Theoretical part is focused on description of selected genera of microorganisms, their cultivation and produced metabolites. Stress factors to which they were exposed are also mentioned, as are the analytical methods used for detection of produced metabolites. Next part is dedicated to the comparison of production properties of selected microorganisms depending on used stress factor. Increased production of lipids in yeast is observed in C. macerans and S. metroseus with higher concentrations of FeCl3. While using whey as a source of ccarbon, yeasts show decreased production of carotenoids. Highest production of lipids in algae and cyanobacteria was observed in S. acutus and D. quadricaudea. Production of carotenoids depended on applien stress factor and highest productions was observed in C. sorokiniana, C. reinhardtii, D quadricaudea and Coccomyxa sp.
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Valorization of waste animal fat by carotenognic yeasts
Chrástová, Nikola ; Němcová, Andrea (referee) ; Márová, Ivana (advisor)
This diploma thesis deals with valorization of waste animal fat using carotenogenic yeast and conversion to biomass enriched with valuable substances. These microorganisms have the ability to utilize various waste substrates and convert them into interesting products such as carotenoids, lipids, ergosterol and ubiquinone. Four strains of yeast (Rhodotorula glutinis, Cystofilobasidium macerans, Rhodotorula mucilaginosa, Sporidiobolus pararoseus) were used. The theoretical part is focused on characterization of yeasts, enzymes and lipases, produced metabolites, yeast and description of analytical methods. In the experimental part, cultures were performed at four C/N ratios on media with different carbon sources, which were glucose, glycerol, fat, fat with added emulsifier, enzymatically hydrolyzed fat and fat with enzyme addition. Biomass was determined gravimetrically for all samples. Carotenoids, ergosterol and ubiquinone were analyzed on an HPLC/PDA equipment. The intracellular lipid content was determined by GC/FID. The production of these substances was different in individual strains depending on the carbon source and the C/N ratio. Rhodotorula glutinis is the most suitable for producing biomass and carotenoids. The highest amounts of ergosterol and ubiquinone were produced by Cystofilobasidium macerans. Sporidiobolus pararoseus had the largest lipid content in biomass. This diploma thesis was elaborated within the international project "LipoFungi".
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Characterization of Rhodosporidium toruloides proteome using LC-MS/MS
Bruštík, David ; Szotkowski, Martin (referee) ; Zdráhal, Zbyněk (advisor)
Characterization of differentially regulated proteins is crucial for the identification of metabolic pathways and their understanding in connection with the creation of important products of a selected strain of yeast. This diploma thesis focuses on the proteome analysis of the Rhodosporidium toruloides cultivated under different conditions. The metabolism of these yeasts with the characteristics of important metabolites is described in the theoretical part. The next part of the thesis is focused on proteomic approaches and bottom-up proteomics from the sample preparation to mass spectrometry analysis. The experimental part deals with the cultivation of yeast at different C/N ratios, next the isolation and determination of proteins using the FASP method, which includes proteolytic cleavage by trypsin, LC-MS/MS analysis and the database search.
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Production and characterization of immunologically active microbial beta-glucans by yeast.
Gerspitzerová, Nela ; Šimanský, Samuel (referee) ; Szotkowski, Martin (advisor)
The aim of this bachelor thesis is to study the effect of different cultivation conditions on the production of biomass, beta-glucans, lipids, carotenoids and other metabolites in selected strains of carotenogenic yeast. The thesis is divided into two main parts, a theoretical one and an experimental one. Theoretical part contains a characterisation of beta-glucans, their sources and uses, furthermore a description of the selected yeast genera and other metabolites they produce and finally possible analytical methods of these compounds. Experimental part describes the cultivation, analysis and obtained results. During the first experiment, the yeast strains were cultivated in production media with different C/N ratio, during the second experiment, the yeasts were cultivated either at room or at lower temperature with different content of phosphorus in the media. The selected strains of yeast were Rhodotorula glutinis, Rhodotorula mucilaginosa, Rhodosporidium toruloides, Cystofilobasidium macerans, Sporidiobolus metaroseus and Sporidiobolus pararoseus. Increasing C/N ratio generally had a positive effect on the production of lipids, while exhibiting the opposite effect on carotenoids, it did not have an unequivocal effect on the amount of beta-glucans. It was discovered that lowering the cultivation temperature had a significant negative effect on the production of all observed metabolites. Increased content of phosphorus in production media positively influenced the production of biomass and beta-glucans in most strains, on the other hand the highest amount of carotenoids was reached at lower concentration of phosphorus. The amount of phosphorus had almost no effect on the production and the profile of lipids. The highest amount of beta-glucans in biomass was discovered in C. macerans, their biggest production was reached by R. toruloides. The strain S. metaroseus was the most suitable for accumulation of lipids in its biomass. The highest amount of total carotenoids was reached by R. mucilaginosa.
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Molecular Study of Intracellular Changes as Response of Microorganisms to Environment
Čarnecká, Martina ; Kráčmar, Stanislav (referee) ; Márová, Ivana (advisor)
Kvasinky žijú v neustále sa meniacom prostredí. Aby prežili tieto výkyvy ich okolitého prostredia, musia sa vedieť rýchlo a efektívne prispôsobiť novým podmienkam. Jedným z aspektov takejto bunkovej adaptácie je reorganizácia génovej expresie na program vyžadovaný pre rast v novom prostredí. Dôsledkom tejto reorganizácie genómu sú zmeny v metabolizme a fyziológií kvasiniek. Molekulárna odpoveď bunky určuje či sa organizmus adaptuje, prežije alebo zahynie. Predložená dizertačná práca sa zaoberá štúdiom vplyvu environmentálnych zmien na genóm a metabolóm vybraných karotenogénnych kvasiniek. Kvasinky boli kultivované jednak za optimálnych podmienok a jednak v oxidačnom a ozmotickom strese a na rôznych odpadových materiáloch (srvátke, zemiakovom odpade a pod.). V prítomnosti stresu bola pozorovaná zvýšená produkcia biologicky významných karotenoidov. Takáto obohatená biomasa môže nájsť svoje uplatnenie v biotechnologickom priemysle, napr. ako krmivo pre zvieratá. Možnosťou štúdia odozvy mikroorganizmov na environmentálny stres je aj príprava transformantov s deléciou vybraných génov a ich analýza. V ďalšej časti práce bola prevedená delécia vybraných génov kvasinky Schizosaccharomyces pombe. Zvolená technika je založená na knockoute konštruktov, ktoré obsahujú regióny homologické s deletovaným génom. Analýzou vytvorených transformantov boli identifikované proteíny potrebné pri meiotickej segregácií chromozómov.
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Biotechnological valorization of some food wastes by yeasts
Majdloch, Robert ; Bendová, Agáta (referee) ; Márová, Ivana (advisor)
This bachelor thesis deals with biotechnological valorisation of waste substrates, namely waste fat, whey and feathers using carotenogenic yeast. Waste substrates serve as alternative source of nutrients for subsequent cultivation, thanks to this, their utilization and subsequent production of carotenoids, ergosterol, coenzyme Q and lipids occurs. The theoretical part contains the information of selected strains of carotenogenic yeast, such as physiological and growth properties. Their metabolic processes are described together with produced substances. The analytical methods for the determination of substances are described as well. The experimental part focuses on the solution of flask and bioreactor cultivations of four selected strains (Rhodotorula kratochvilovae, Rhodotorula mucilaginosa, Cystofilobasidium macerans a Sporidiobolus pararoseus) on glucose, glycerol and waste substrate at different C/N ratios (13, 25, 50 and 100). Furthermore, individual procedures of waste substrate processing, procedures solving isolation and determination of selected carotenoid substances, which were analysed by HPLC/DAD. Lipid content and their percentage amount were determined by GC/FID. The results of flask and bioreactor cultivations show that the strains have different production at individual C/N ratios. Rhodotorula mucilaginosa strain was selected as the best producer of carotenoids and ergosterol. The highest increases in biomass were achieved by Rhodotorula kratochvilovae strain. Lipid production was the best in the Sporidiobolus pararoseus strain.
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Use of carotenogenic yeasts to production of lipid soluble metabolites
Mariničová, Veronika ; Hlaváček, Viliam (referee) ; Márová, Ivana (advisor)
Carotenoids are fat-soluble chemical compounds that occur as natural pigments in many plants and protect them from sunlight. Lipids are also essential lipophilic substances and they are part of biomembranes. Their main function is primarily to serve as a power supply for the cell, protective function and thermal protection against adverse environmental influences. This bachelor thesis deals with cultivation of selected carotenoid yeast genes, subsequent isolation of carotenoids and other lipid substances, which can be used as a source of potentially beneficial substances for the pharmaceutical or cosmetic industry. The theoretical part deals with the description of carotenoid yeasts, chemical composition and biosynthesis of the metabolites produced, and description of the methods used for their determination. The experimental part is focused mainly on the production of lipid substances by various strains of yeasts using cheap waste substrates and the application of exogenous stress (nutritional stress) to the biotechnological overproduction of selected metabolites using the modification of the production medium. The content of carotenoids, ergosterol and coenzyme Q was analyzed by high performance liquid chromatography with a PDA detector. The lipids accumulated in yeast cells were determined by gas chromatograph with a FID detector. In this work the strains of Sporobolomyces pararoseus, Sporobolomyces metaroseus, Rhodotorula glutinis and Cystofilobasidium infirmominiatum were studied. As waste substrates and carbon sources were used glycerol, which is produced as a waste product in the production of biofuels and whey as an unusable product in dairy technology. The best production on waste substrates was observed in the strains Rhodotorula glutinis and Cystofilobasidium infirmominiatum.
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