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Ecological consequences of polyploidization in populations of the wetland plant Butomus umbellatus
Rydlo, Jan ; Fér, Tomáš (advisor) ; Trávníček, Pavel (referee)
This thesis aimed on comparison of environmental requirements and morphological and biological traits of diploid and triploid cytotypes of wetland plant flowering rush (Butomus umbellatus), occurring in Eastern Slovak Lowland in unique mixed populations, and to develop primers for variable microsatellite loci suitable for further genetic studies. In total, 72 populations of Butomus umbellatus were found. The analysis of relative genome size by the flow cytometry (FCM) technique revealed 34 exclusively triploid cytotype populations, 8 exclusively diploid populations and 30 mixed populations of Butomus umbellatus. In mixed populations, the numbers of diploid and triploid individuals are quite equivalent and the plants create combined compact communities. Analyses of environmental characteristics of sites with specific cytotypes (PCA, RDA, ANOVA) revealed no difference in site requirements of diploid and triploid Butomus umbellatus plants. Morphometric analyses (PCA, CDA) of traits of 36 diploid and 54 triploid plants confirmed differing morphology of both cytotypes occurring in the nature. Subsequent replanting of these plants into pots and cultivation further increased these differences. The ratio of width and length of internal perianthium is the most reliable parameter to distinguish diploid and...
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Genome size evolution in Costaceae
Böhmová, Alžběta ; Fér, Tomáš (advisor) ; Rybka, Vlastimil (referee)
Genome size in plants varies greatly; in angiosperms this variability can make a 2400- fold difference. This is why the subject of many studies is the attempt to explain these differences in various contexts. One of these is the phylogenetic viewpoint, which studies the relationships between genome size and different taxonomic groups. Many studies have been published so far which explore the plants of the temperate zone; there are however very few studies investigating genome size in tropical plants. For this reason, the subject of this thesis is the analysis of genome size in the pantropical family Costaceae Nakai. This family presently includes seven genera: Monocostus K.Schum., Dimerocostus Kuntze, Costus L., Paracostus C.D.Specht, Chamaecostus C.D.Specht & D.W.Stev, Hellenia Retz. and Tapeinochilos Miq., counting altogether about 300 species. The family is sister to the family Zingiberaceae, which has been notably better explored due to its economic importance. One of the aims of this thesis was a partial revision of the phylogeny published by Specht (2006). Molecular methods were used to analyse the phylogenetic relationships; these methods included classical sequencing of the trnL-F region and next-generation sequencing, where probes designed in advance were used to obtain the targeted genes....
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Evolutionary history of tetraploid representatives Galium pusillum group (sect. Leptogalium) in central Europe. Allopatric differentiation of Czech endemic species G. sudeticum
Knotek, Adam ; Kolář, Filip (advisor) ; Chrtek, Jindřich (referee)
The presented study tries to reveal the evolutionary history of polyploid complex Galium pusillum aiming on a rare czech endemic species G. sudeticum, an ideal model to study allopatric speciation in the context of Central European (post)glacial development. The species G. sudeticum grows in Krkonose Mts. and on serpentines in western Bohemia (Slavkovský les) more than 200 kilometers away. Our morphological and molecular data suggest a clearly different history of its two isolated areas. The populations in Krkonose Mts. are probable relics of mountainous species G. anisophyllon which was there on its northern border of occurence and hybridized with lowland species G. valdepilosum during postglacial vegetations shifts. This fact is well supported by intermediate position of Krkonose Mts. populations in both morphological and molecular AFLP analyses and by sharing the same chloroplast haplotype with geographically close lowland populations. On the other hand the serpentine lowland populations in western Bohemia are both morphologicaly and genetically indistinguishable from G. valdepilosum. Distinct genetic lineage of few populations belonging to G. valdepilosum (incl. one traditionaly referred as G. sudeticum) was found in western Bohemia and Bavaria, located on relic stands (calcareous and serpentine...
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Ecological and evolutionary consequences of edaphic differentiation in plant polyploid systems
Kolář, Filip ; Suda, Jan (advisor) ; Tribsch, Andreas (referee) ; Krahulec, František (referee)
The thesis deals with evolutionary and ecological consequences of edaphic speciation (adaptation to different soil types) and genome duplication (polyploidization), acting in concert. Using a wide range of ecological, karyological and molecular approaches, several hypotheses of general importance have been examined in three model angiosperm systems (ploidy variable species or species aggregates occurring both on and off specific substrates, including serpentines and calcareous soils). In the Knautia arvensis group (Caprifoliaceae) a unique cryptic diploid lineage in central Europe was identified to be restricted to serpentine and limestone outcrops, which served as refugia during environmental changes (forest spread, human impact) in the Holocene. These refugial populations exhibited strong evolutionary potential because they were able to polyploidize and escape beyond the borders of their original edaphically-conditioned refugia owing to hybridization with surrounding widespread homoploid genotypes. Survival of both Knautia cytotypes on serpentine soils was facilitated by their high tolerance to chemical stress factors such as high Ni concentrations and low Ca/Mg ratios. In the Galium pusillum group (Rubiaceae), a striking cytological, ecological, and taxonomic, diversity was revealed in northern and...
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Polyploid speciation of the genus Anthoxanthum in Europe
Khodlová, Zuzana ; Trávníček, Pavel (advisor) ; Štech, Milan (referee)
Eight of fifteen species in genus Anthoxanthum (Poaceae) can be found in Europe. Five of them are perennials forming A. odoratum complex, the remaining three are annual, more or less mediterranean taxa (A. aristatum, A. ovatum and A. gracile). Within the A. odoratum s. l. complex the following taxa are distinguished: widely spread A. odoratum s. str. (4x; 2n = 20), arcto-alpine A. alpinum (2x a 4x; 2n = 10 and 20), Madeiran endemic species A. maderense (2x; 2n = 10), endemic species of Balkan mountains A. pauciflorum (2x; 2n = 10) and the Iberian peninsula endemic A. amarum (?x; 2n ~ 90). The aim of this thesis is to clearify the unknown evolutionary relationships between the taxa, between the annuals and perennials, diploids and polyploids. The following questions should be answered in this study: 1) What is the origin and distribution of the rediscovered diploid perennial taxon and what is its relationship to the other members of the group; 2) What is the distribution pattern of the perennial taxa of the genus Anthoxanthum in Europe and what is their haplotype differenciation (overall distribution of the taxa and haplotypes and the existence of their sympatric occurence); 3) What evolutionary ties exist among the species and what is the origin of allotetraploid taxon A. odoratum s.str. The...
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The role of polyploidisation in the evolution of the genus Chenopodium with a focus on Chenopodium quinoa
Babčanová, Natália ; Štorchová, Helena (advisor) ; Cvrčková, Fatima (referee)
Chenopodium is a cosmopolitan paraphyletic genus. Belongs to the Amaranthaceae family and the Chenopodioideae monophyletic subfamily. Diploid, tetraploid and hexaploid species are found in almost all evolution branches of Chenopodioideae, in the case of Chenopodium album, different degrees of ploidy occur within a single species. The degree of ploidy is an important factor in the study of evolution and phylogenetic relationships between Chenopodium species and it also affects the speciation and morphology. The genus Chenopodium includes weeds as well as cultivated crops, such as Chenopodium quinoa, Ch. pallidicaule, Ch. ambrosioides or Swaeda foliosa. Quinoa (Chenopodium quinoa) is the best known species of the Chenopodium genus. It is an allotetraploid (2n = 4x = 36), derived from the same albeit not yet known diploid parents as a closely related tetraploid Ch. berlandieri. Some of its alleles segregate as in a functional diploid, which complicates genetic analyses and breeding efforts. This species features high genetic variability due to gene flow between weed and crop populations and some other evolution processes that are affected by polyploidy. Quinoa is referred to as a pseudocereal and it has been used as a crop in South America as early as in the Inca times. It can survive at locations unsuitable...
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Evolutionary history of polyploid complex Galium pumilum in Central Europe
Knotek, Adam ; Kolář, Filip (advisor) ; Urfus, Tomáš (referee)
The thesis summarizes current knowledge about the polyploid complex of Galium pummilum agg. in Central Europe. This work should provide a theoretical background for a following diploma thesis. Most species of the aggregate are difficult to be determined due to considerable morphological variability and a complex evolutionary history probably involving recurrent polyploidization and hybridization events. Currently, new molecular methods are changing our opinion on the taxonomical classification within the group. Except for G. pumilum MURRAY, the other species show rather disjunctive distribution and are found on relict habitats. This could be caused by postglacial migration and subsequent area fragmentation. Most of the previous studies focused on Galium were published by Friedrich Ehrendorfer, who since the 50th defined division of the complex on the basis of chorological, karyological and morphological data. With new molecular methods, his hypotheses are now exposed to verification. Galium sudeticum TAUSCH. represents an enigmatic and vulnerable taxon of the Czech flora, that raises various interesting questions from both evolutionary and conservation points of view. It has a remarkable disjunct distribution in the Giant mountains (Krkonoše) and in one serpentine area in western Bohemia...
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Ecological and evolutionary consequences of polyploidization
Pavlíková, Zuzana ; Münzbergová, Zuzana (advisor) ; Rooks, Frederick (referee)
The frequency of polyploidy in natural populations is much more common than previously thought, suggesting that polyploidy must bring their holders either long or at least short term evolutionary advantage compared with their diploid ancestors, because otherwise they would not expand massively. The thesis deals with the consequences of polyploidy for genome, meiosis, mode of reproduction and the resulting viability of polyploid plants. It also describes and evaluates the possible reasons for the evolutionary success of polyploid plants. It also described the creation polyploids in diploid populations, the interactions between diploids and polyploids and the mechanisms of creation of reproductive isolation between cytotypes. Further, I paid attention to the interactions between polyploidy, herbivores and pollinators. In conclusion, I mention methods of synthesis neopolyploid plants, the possibility of their use and methods of detection of ploidy in plants.
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Molecular aspects of interspecific hybridization of sturgeons related to polyploidy and in situ conservation
HAVELKA, Miloš
Sturgeons (Chondrostei: Acipenseriformes) display markedly disjunct distributions with a wide occurrence in the northern hemisphere. Their unique benthic specializations, conserved morphology, evolutionary age, the variation in their basic diadromous life history, and the large public interest due to their near extinction or critically endangered status make sturgeons and paddlefishes one of the most interesting group of vertebrates. In addition to that, ploidy diversity of Acipenseriformes possessing three ploidy groups having ~ 120 chromosomes, ~ 240 ? 270 chromosomes and ~ 360 chromosomes provides unique model for investigation of evolutionary processes which were going through the genome duplication events. Sturgeons are also notoriously known for their strong propensity to interspecific and intergeneric hybridization which can result in hybrids with various ploidy levels. All these facts make sturgeon genetics and cytogenetics a thriving but also complicated area for research. In the present work, the role of genome duplication and functional reduction evens in evolution of sturgeon species as well as sturgeons? ploidy levels and ploidy relationships among Acipenseriformes were investigated using molecular markers. In addition to that, clarification of origin of abnormal ploidy levels and observation of segregation pattern of microsatellite alleles in the course of hybridization of polyploid sturgeon species were included into this study. With regard to the all considerations and observations provided by this study we concluded that evolution of sturgeon species is still widely dynamic and ongoing process which might goes through the allopolyplodization as well as autopolyplidization events.
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