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Molecular cztogenetic analysis of adaptive radiation in the gecko genus Paroedura (Squamata:Gekkota)
Koubová, Martina ; Kratochvíl, Lukáš (advisor) ; Šťáhlavský, František (referee)
Paroedura genus includes 17 described species endemic to Madagascar and the Comoros Islands, where they went through a significant adaptive radiation. The genus Paroedura is monophyletic and well supported hypothesis on phylogenetic relationships among its species was published. Species vary considerably in body size and morphology and in preferences for habitat, some species live in sympatry. The genus Paroedura belongs to cytogenetically poorly studied family Gekkonidae which exhibits high variability in modes of sex determination and in comparison with basal gecko lineages, also considerable variability in the chromosome number and morphology. Karyotypes of only two species of the genus (P. picta, P. sp.) have been published. The aim of my thesis was to describe karyotypes of both sexes in all available species of the genus using conventional and molecular cytogenetic methods, to perform the phylogenetic analysis of karyotype evolution and chromosomal rearrangements in the genus, to assess the role of these rearrangements in the speciation of the genus and to detect sex chromosomes. I acquired karyotypes of both sexes in nine species representing the most of major phylogenetic lineages of the genus. According to the results, species can be divided into three groups according to diploid...
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Karyotype analysis of mygalomorph spiders of the families Hexathelidae and Dipluridae
Hrubá, Barbora ; Král, Jiří (advisor) ; Sember, Alexandr (referee)
Cytogenetics of spiders of the infraorder Mygalomorphae is largely unknown. My thesis is focused on the karyotype evolution of spiders of families Hexathelidae Dipluridae, which are basal groups of the superfamily Avicularioidea. In this thesis the evolution of diploid chromosome number, chromosome morfology, and also sex chromosomes are studied. The karyotypes of the mygalomorphs are quite interesting for their diversity. Many members of the family Hexathelidae exhibit extreme systems of a chromosomal sex determination which are composed by many gonosomes X. The meiotic division of males is analyzed. Some species exhibit modifications of this division such as achiazmatic meiosis. Selected markers have been detected by fluorescence in situ hybridization. Keywords: evolution, fluorescent in situ hybridization, karyotype, nucleolus organizer region, sex chromosomes, spider
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Origin, degeneration and detection of sex chromosomes
Jílková, Klára ; Král, Jiří (advisor) ; Kratochvíl, Lukáš (referee)
Sex chromosomes evolved from a pair of autosomes and they are differentiated as a result of supression of recombination. This process leads to a successive degradation of odd sex chromosome (alosome), which is becoming genetically inert finally or even excluded. Fundamental processes taking part in degeneration of alosome are Muller's ratchet, genetic hitchhiking, background selection, accumulation of transposable elements and constitutive heterochromatin. Indeed, these processes take part in either degeneration of both Y or W chromosomes. Remarkably, these alosomes show different rates of degeneration, most probably due to 1) different structure of male and female gonads as well as 2) different course of gametogenesis in both sexes. Furthermore, rate of alosome degeneration is usually lower in plants because they are haploid during the major part of life cycle. Other mechanisms of sex chromosome evolution involve rearrangements between autosomes and gonosomes, nondisjunctions and fissions of original sex chromosomes, transformation of B chromosomes into sex chromosomes or non-random segregation of autosomes with sex chromosomes. Other phenomenon that appears in sex chromosome evolution is transition between XY/XX and ZW/ZZ systems or transition between chromosomal sex determination and epigamy. Actually,...
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Genomic imprinting and evolution of sexually dimorphic traits
Farkačová, Klára ; Kratochvíl, Lukáš (advisor) ; Munclinger, Pavel (referee)
Genomic imprinting is a process whereby expression of an allele differs depending upon its parent of origin. It can be found on autosomes and also on sex chromosomes. Basic hypothesis for the evolution of genomic imprinting is the hypothesis based on the existence of sexual conflict. It can be classified into interlocus sexual conflict and intralocus sexual conflict hypotheses. Under interlocus sexual conflict hypothesis we can diffferentiate parental conflict hypothesis and parent-offspring conflict hypothesis. These theories were historically proposed for the first two taxonomical groups, where genomic imprinting was discovered, namely for angiosperms and placental mammals. Theory of parental conflict proposes that genomic imprinting evolved because the paternally inherited alleles are more selfish to mothers than are the maternally inherited alleles. Parent-offspring conflict hypothesis proposes that genomic imprinting evolved because maternal genes try to regulate demands of paternally inherited alleles in embryos. More recently, genomic imprinting has been found also in other taxons and in alleles, which do not bring any advantage during embryonic development. The intralocus sexual conflict hypothesis is applicable for every trait under sexually-specific selection. It provides potential...
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Evolution of sex chromosomes and karyotypes in iguanids (Squamata: Iguanidae sensu lato)
Altmanová, Marie ; Kratochvíl, Lukáš (advisor) ; Symonová, Radka (referee)
Iguanids are greatly diversed group of squamate reptiles (Reptilia, Squamata). Although there were many phylogenetical studies made, the relationships among main lineages are still unclear. In cytogenetical point of view is this group relatively conservative. In three species-rich genus only, the diversity of karyotypes is relatively considerable: Anolis, Liolaemus a Sceloporus. Diploid chromosome number varies between 19 and 48. Ancestral karyotype is defined as 2n=36, with 12 macrochromosomes and 24 microchromosomes. Morphologically the macrochromosomes are mostly metacentric, rarely acrocentric or telocentric. In karyotype evolution Robertsonian rearrangements dominate apparently, where number of chromosome arms is preserved. Interspecific variability or variability between populations were observed. Sex seems to be determined by genotype for whole group (GSD). Across the group probably attended conditionally to multiple differentiation of sex chromosomes. In 75 of 219 caryotyped were detected XX/XY type of sex chromosomes or derived multiple sex system X 1X 1X 2X 2/X 1X 2Y. The transition from multiple sex chromosomes back to XX/XY type was observed in one species. Chromosome Y shows morphological variability in size and shape, from microchromosom to huge metacentric macrochromosom. Homology of sex...
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Use of cytogenetical methods in taxonomy of Arachnida (Arachnida)
Alaverdyan, Argam ; Šťáhlavský, František (advisor) ; Johnson Pokorná, Martina (referee)
This bachelor thesis deals with the use of cytogenetic methods in taxonomy of Arachnida. To understand this matter, we need to analyse available information about inter and intraspecific karyotype variability of individual orders. At the beginning of the thesis there is a description of cytogenetic methods used with Arachnida.They are used to gather the karyotype's fundamental information, such as the diploid number of chromosomes, chromosome morfology and possible occurence of sex chromosomes. Main part of the thesis is focused on describing karyotypes of selected orders (Amblypygi, Palpigradi, Pseudoscorpiones, Scorpions, Opiliones and Araneae) and considering the convenience of use of cytogenetic methods for their taxonomy based on these information. The thesis includes current number of described genera (species) of the orders, as well as a number of cytogenetically analyzed genera (species) for comparison.
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Karyotype analysis of selected representatives of two pedipalpid orders, Amblypygi and Uropygi
Sember, Alexandr ; Král, Jiří (advisor) ; Ráb, Petr (referee)
Karyotype analysis of selected species from arachnid orders Amblypygi and Uropygi Whip spiders (Amblypygi) and whip scorpions (Uropygi) represent relict arachnid orders which has been found already at Upper Carboniferous strata. Although cytogenetic data from amblypygids and uropygids might be important to reconstruct karyotype evolution of arachnids, cytogenetics of these orders is almost unknown. Presented study is aimed in analysis of karyotype and meiosis in 16 species of Amblypygi and 4 species of Uropygi. Both groups are characterized by considerable range of diploid chromosome numbers (2n = 24 - 86 in Amblypygi and 36 - 66 in Uropygi). Analysed species does not exhibit morfologically differentiated sex chromosomes. Differentiation of sex chromosomes on molecular level was revealed in amblypygid Paraphrynus mexicanus by comparative genome hybridization. Obtained data indicate XY/XX sex chromosome system in this species. Comparison of karyotype data indicates reduction of chromosome numbers during evolution of both orders. In Amblypygi, this reduction was accompanied by increase of number of biarmed chromosomes. This trend is not apparent in Uropygi. Karyotypes of most analysed amblypygids and uropygids are also characterized by low amount of heterochromatin. Most studied species exhibit two pairs...
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Genetic mapping in Xenopus
Seifertová, Eva ; Krylov, Vladimír (advisor) ; Ráb, Petr (referee) ; Marec, František (referee)
The diploid amphibian Xenopus tropicalis represents a significant model organism for studies of early development, genes function and evolution. Such techniques as gynogenesis, injection of morpholino antisense oligonucleotide into fertilized eggs or transgenesis were established. In the recent ten years, many efforts have been made to complete the sequence information. X. tropicalis genome has been sequenced but the completion of its assembly only on the basis of sequence data has been impossible. Therefore, our first work was focused on one of approaches for a genome completing- genetic mapping. First of all, the genetic map of Xenopus tropicalis was established pursuant linkage and physical positions of markers. Since the map contained gaps, we developed a new method for genetic mapping based on the next generation sequencing of laser microdissected arm. Using Illumina next generation sequencing of fifteen copies of a short arm of chromosome 7, we obtained new insights into its genome by localizing previously unmapped genes and scaffolds as well as recognizing mislocalized portions of the genome assembly. This was the first time laser microdissection and sequencing of specific chromosomal regions has been used for the purpose of genome mapping. These data were also used in the evolution study of...
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Evolution of sex chromosomes and karyotypes in the lizard clade Laterata
Buchbauerová, Lucie ; Kratochvíl, Lukáš (advisor) ; Šťáhlavský, František (referee)
The aim of this study was to summarize all what is known about the karyotype and about sex chromosomes in the lizard clade Laterata and to analyze this two gained datasets by means of a phylogeny. Karyotype represents a whole number of chromosomes in a cell and it is an important source of informations on how the genetic information in nucleus is organized and how it works along with the evolution. The Laterata clade consists of four big groups of squamate reptiles: Teiidae, Gymnophthalmidae, Amphisbaenia and Lacertidae. All the groups have a genotypic sex determination system (GSD) and some species within these clades posses sex chromosomes. If they are present, in Teiidae and Gymnophthalmidae it is the XY sex chromosome system which determines the sex of a specimen. On the other hand, in Amphisbaenia and Lacertidae it is the ZW system of sex determination. Sometimes the X1X1X2X2:X1X2Y or Z1Z1Z2Z2:Z1Z2W sex chromosome system occurs in Teiidae / Gymnophthalmidae or in Lacertidae, respectively. The phylogenetical analysis was performed in Mesquite programme and the output from the analysis is a phylogenetical tree with two characters (number of chromosomes and the sex determination system) and the maximum parsimony counted for each of them. Then the interpretation was on the order and it is the main...
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