Original title: Homologsearch: R Package For Identifying Homologous Sequences Between Model And Non-Model Organisms
Authors: Musilová, Jana
Document type: Papers
Language: eng
Publisher: Vysoké učení technické v Brně, Fakulta elektrotechniky a komunikačních technologií
Abstract: In this paper, I present the R package HomologSearch. The package serves for searching similarities between two sequences (protein or nucleotide) in a fasta format. The evaluation is computed using the BLAST algorithm and output is a table of homologous locus tags and genes (if available). The HomologSearch is available in the GitHub repository under the name ‘Jana- Mus/HomologSearch’ and can be installed as a library into the R language.
Keywords: R package; sequence homology; sequence similarity
Host item entry: Proceedings I of the 26st Conference STUDENT EEICT 2020: General papers, ISBN 978-80-214-5867-3

Institution: Brno University of Technology (web)
Document availability information: Fulltext is available in the Brno University of Technology Digital Library.
Original record: http://hdl.handle.net/11012/200587

Permalink: http://www.nusl.cz/ntk/nusl-447639


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