Original title:
Homologsearch: R Package For Identifying Homologous Sequences Between Model And Non-Model Organisms
Authors:
Musilová, Jana Document type: Papers
Language:
eng Publisher:
Vysoké učení technické v Brně, Fakulta elektrotechniky a komunikačních technologií Abstract:
In this paper, I present the R package HomologSearch. The package serves for searching similarities between two sequences (protein or nucleotide) in a fasta format. The evaluation is computed using the BLAST algorithm and output is a table of homologous locus tags and genes (if available). The HomologSearch is available in the GitHub repository under the name ‘Jana- Mus/HomologSearch’ and can be installed as a library into the R language.
Keywords:
R package; sequence homology; sequence similarity Host item entry: Proceedings I of the 26st Conference STUDENT EEICT 2020: General papers, ISBN 978-80-214-5867-3
Institution: Brno University of Technology
(web)
Document availability information: Fulltext is available in the Brno University of Technology Digital Library. Original record: http://hdl.handle.net/11012/200587