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Evaluation of gene expression of selected ABC and SLC transporters in the HTR-8/SVneo cell line during stimulation with pro-inflammatory cytokines
Pokorná, Petra ; Čečková, Martina (advisor) ; Mladěnka, Přemysl (referee)
Charles University Faculty of Pharmacy in Hradec Králové Department of Pharmacology & Toxicology Student: Petra Pokorná Supervisor: Assoc. Prof. PharmDr. Martina Čečková, Ph.D. Consultant: Mgr. Simona Dudičová Title of diploma thesis: Evaluation of gene expression of selected ABC and OATP transporters in the HTR-8/SVneo cell line during stimulation with pro-inflammatory cytokines Placenta is the first and the largest fetal organ that gradually develops during pregnancy and plays an essential role in the development of the fetus. It fulfills the entire spectrum of functions, ensures the transport of nutrients to the fetus and the removal of waste substances back into the maternal circulation, protects the fetus from toxins, and at the same time fulfills a certain mechanical and especially immunological barrier between mother and fetus. One of the main functions of the placenta is the transport function which is made possible by membrane transporters present mainly in the syncytiotrophoblast layer of the placenta. Transporters in the human placenta can be divided into two families, SLC and ABC which are further divided into several subfamilies. The expression of transporters changes physiologically during pregnancy, but pathological conditions such as inflammation can also influence the expression....
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Black carbon measuruments comparison
Vítová, Jana ; Zíková, Naděžda (advisor) ; Vondráková Pokorná, Petra (referee)
This thesis focuses on comparing three devices designed for measuring equivalent black carbon (referred to as eBC - equivalent black carbon), specifically the MAAP instrument (Multi-Angle Absorption Photometer) model 5012, the Aethalometer model AE33, and a semi-continuous analyzer of organic and elemental carbon. The instruments collected eBC concentrations at the Institute of Chemical Process Fundamentals of the Czech Academy of Sciences (Ústav chemických procesů AV ČR, v.v.i.) in the northwest of Prague from October 4, 2021, to September 30, 2022. Initially, total eBC concentrations were compared between all mentioned instruments using the non-parametric Wilcoxon test. Subsequently, daily, weekly, and annual variations in BC were determined. Finally, values of the Ångström absorption coefficient, mass absorption cross section (MAC), and harmonization factor C, which had not been determined for the mentioned measurement area, were calculated. For all instruments, a mutual agreement was found, confirmed by correlation coefficients: AE33 and MAAP with r=0.88, AE33 and OC/EC with r=0.83, and MAAP and OC/EC with r=0.76. The coefficients of determination between individual instruments were also obtained: AE33 and OC/EC with Rš=0.68, OC/EC and MAAP with Rš=0.57, and AE33 and MAAP with Rš=0.77. The...
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WATER-SOLUBLE COMPOUNDS PM2.5 AT THREE RURAL BACKGROUND SITES IN CENTRAL EUROPE DURING COLD AND WARM PERIODS
Schwarz, Jaroslav ; Vodička, Petr ; Lhotka, Radek ; Pokorná, Petra ; Zíková, Naděžda ; Ondráček, Jakub ; Aurora, S. ; Poulain, L. ; Herrmann, H. ; Ždímal, Vladimír
Ion chromatography (IC) was used to characterize water soluble compounds in PM2.5 during winter and summer campaigns at three rural sites in Central Europe in 12-hour (day/night) time resolution. Concentrations of biomass combustion aerosolsdoubled from Melpitz to Košetice in winter, sea salt exhibited opposite behaviour. Summer exhibited higher sulphates and methane sulphonic acid in Melpitz. Day to night ratios showed higher day concentrations for phosphates and compounds connected to fungal spores and bacteria, while higher night concentrations were connected to wood combustion. Ventilation index was used as an approximate measure to distinguish local and long range transported aerosols. Biomass combustion products were identified as the \nmajority of local aerosols, while sea salt as long range transported one.
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TRACERS OF ANTHROPOGENIC AND BIOGENIC SOURCES OF ORGANIC AEROSOL IN THE PM1 FRACTION AT THE KOŠETICE BACKGROUND STATION
Vodička, Petr ; Kawamura, K. ; Deshmukh, D.K. ; Pokorná, Petra ; Schwarz, Jaroslav ; Ždímal, Vladimír
In this study, we have examined in detail the seasonal changes in the concentration of sugars, dicarboxylic acids and their oxidation precursors in fine aerosol at a rural Central European background site. The aim of the study was to identify typical tracers for different sources of organic aerosol and to determine their contributions to organic PM1.We found a clear difference between winter and summer PM1 aerosol composition at the molecular level. Subsequently, we identified two biogenic factors (dominant in summer), two anthropogenic factors (major contribution in winter) and one background factor.\nMore details could be found in Vodička et. al (2023).
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SUBMICRON AEROSOL AT TWO URBAN STATIONS IN PRAGUE
Pokorná, Petra ; Zíková, Naděžda ; Vodička, Petr ; Lhotka, Radek ; Ondráček, Jakub ; Schwarz, Jaroslav ; Ždímal, Vladimír ; Hopke, P.
The aim of this work was to determine the submicron aerosol dynamics, chemical compositions, and origins at two sites in Prague based on the particle number size distribution (PNSD) and chemical composition of 2/12/24h atmospheric aerosol samples (PM1) collected in parallel for half-year/within two seasons at two urban sites (suburban – Suchdol and traffic – Vršovice). Chemical analysis of PM1 for carbon (elemental, equivalent black – eBC and organic) by thermo-optical method and for water-soluble inorganic ions by IC was performed. For most months, both number and mass median \nconcentrations based on the SMPS data differed. Higher eBC concentrations were measured in Vršovice however eBC concentrations showed good correlation (r=0.80, yintercept=0) at the two stations. Higher average PM1 at the traffic site in summer and at the suburban site in winter, and seasonal differences in ionic PM1 composition reflected the seasonality of the local sources. Nevertheless, there were no statistically significant differences in PM1 concentration and ionic composition between the sites.
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HIGHLY-TIME RESOLVED ELEMENTAL SOURCE APPORTIONMENT OF PM2.5 AT AN URBAN TRAFFIC SITE IN PRAGUE
Windell, Laurence Christian ; Pokorná, Petra ; Ondráček, Jakub ; Schwarz, Jaroslav ; Lhotka, Radek ; Vodička, Petr ; Zíková, Naděžda ; Hopke, P.K. ; Ždímal, Vladimír
This work aims to quantify metal emissions from traffic at an urban traffic site in Prague, Czech Republic, identify key tracers of emissions, and investigate exhaust and non-exhaust emissions observable in fine particulate matter (PM2.5). This project signifies the first high-time resolution elemental analysis of Prague aerosols.
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(IN)DEPENDENCE OF AEROSOL ACTIVATION ON CLOUD POSITION
Zíková, Naděžda ; Pokorná, Petra ; Sedlák, Pavel ; Sokol, Zbyněk ; Ždímal, Vladimír
Five in situ campaigns focused on aerosol-cloud interactions were conducted at Mount Milešovka in the Czech Republic to gain more insight into aerosol activation and its dependence on meteorological parameters, mainly vertical air velocity and position within the cloud. The activated fraction was calculated from the difference of concentrations measured behind the whole air inlet and the PM2.5 inlet. The liquid water content (LWC) was calculated from visibility, cloud base position was estimated from ceilometer data. Vertical air velocity was estimated from cloud radar. No strong dependence was found between visibility and vertical velocity, suggesting that the clouds at the station are mostly of advection or inversion origin. Both visibility and LWC depend on the position within the cloud, with the highest LWC values found when the station was between 100 and 400 m above the cloud base, independently of the actual value.
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Evaluation of gene expression of selected ABC and SLC transporters in the HTR-8/SVneo cell line during stimulation with pro-inflammatory cytokines
Pokorná, Petra ; Čečková, Martina (advisor) ; Mladěnka, Přemysl (referee)
Charles University Faculty of Pharmacy in Hradec Králové Department of Pharmacology & Toxicology Student: Petra Pokorná Supervisor: Assoc. Prof. PharmDr. Martina Čečková, Ph.D. Consultant: Mgr. Simona Dudičová Title of diploma thesis: Evaluation of gene expression of selected ABC and OATP transporters in the HTR-8/SVneo cell line during stimulation with pro-inflammatory cytokines Placenta is the first and the largest fetal organ that gradually develops during pregnancy and plays an essential role in the development of the fetus. It fulfills the entire spectrum of functions, ensures the transport of nutrients to the fetus and the removal of waste substances back into the maternal circulation, protects the fetus from toxins, and at the same time fulfills a certain mechanical and especially immunological barrier between mother and fetus. One of the main functions of the placenta is the transport function which is made possible by membrane transporters present mainly in the syncytiotrophoblast layer of the placenta. Transporters in the human placenta can be divided into two families, SLC and ABC which are further divided into several subfamilies. The expression of transporters changes physiologically during pregnancy, but pathological conditions such as inflammation can also influence the expression....
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Methodology for identification of pollution sources using PMF for strategic decision making in air protection - update 2023
Horník, Štěpán ; Sýkora, Jan ; Pokorná, Petra
The presented methodology proposes utilizatíon of the spectroscopy of nuclear magnetic resonance (NMR) as another analytical technique for the identification of compounds in atmospheric aerosols. This technique makes significantly increases the number of deterined substances and thus a number of possible markers, which can be subsequently used together with other methods to identify sources of air pollution using advanced statistical\nanalysis. Among the markers determined by NMR spectroscopy there are several organic and sulfonic acids or carbohydrates, wich are characteristic for relevant sources of air pollution. The updated methodology also shows the identification of a biogenic source that previous methodologies were not able to determine.
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Dependence of aerosol activation on meteorological conditions
Zíková, Naděžda ; Pokorná, Petra ; Sedlák, Pavel ; Ždímal, Vladimír
Four intensive in-situ campaigns focused on aerosol-cloud interactions were performed in the autumn and spring months from Nov 2018 to Apr 2020 at Milešovka Mountain in Czechia to bring more insight into size-dependent aerosol activation and dependence on its origin for a wide variety of meteorological parameters. Most activated particles were larger than 100 nm, with a mode over 200 nm. For the description of the changes in the activation, no effect of photochemistry was found, in contrast, some dependence on relative humidity, temperature, wind speed, and liquid water content (LWC) proved to be useful. The strongest connection was found between activation and LWC. For LWC below 0.1 g/m3, in the LWC-limited regime, the LWC values and variables effecting the LWC were the main factors influencing the activation, while different parameters could have played a role at LWCs over 0.1 g/m3, in the LWC-independent regime.
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