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Genetická diverzita afrických plchů rodu \kur{Graphiurus} (Rodentia, Gliridae)
LIŠKOVÁ, Edita
The African dormice from genus Graphiurus are endemic in sub-Saharan Africa and could be found in a variety of habitats from tropical lowland rainforests to arid savanna woodlands. The taxonomy and systematics of this genus are still unclear because no genetic study has included all known taxa. There are 15 species currently recognized. For my thesis, I sequenced mitochondrial cytochrome b from the most comprehensive up-to-date material, mostly from eastern and western Africa. Species delimitation under maximum likelihood and Markov chain Monte Carlo revealed the presence of 22 molecular taxonomic units (MOTUs). Phylogenetic analysis based on bayesian inference did not statistically resolve all relationships among identified MOTUs. Future studies concerning taxonomy and phylogenetic relationships of Graphiurus species should therefore include more genetic data.
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Telestes perspective on the karstic poljes of eastern Herzegovina
Doulíková, Tereza ; Vukićová, Jasna (advisor) ; Choleva, Lukáš (referee)
The Dinaric karst region in the Balkans is one of the hot spots of biodiversity with a high number of endemic freshwater fish. The major cause of the high degree of endemism are numerous paleoclimatic and geological events that have affected the formation of the entire area. Flows of karst poljes represent a specific ecosystem to which some fishes have adapted. The poljes have been periodically flooded and these floods may activate different underground channels, which lead to interconnection of poljes. These fish species spend a part of the year in surface water and a part in groundwater and they may use the underground flows between poljes for migration. The aim of this thesis is to evaluate the genetic variability of two endemic fish species of the genus Telestes living in karst poljes in the region of eastern Herzegovina, and to detect a possible current gene flow between populations of these species due to the connection of underground flows. For this purpose, the DNA from 102 individuals from five different localities was isolated. The mitochondrial marker cytochrom b and 16 microsatellite loci were used for the analyses. The results point to very low variability between species and populations. Based on mitochondrial marker analysis, no link between populations of the species was detected,...
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Resistance of Zymoseptoria tritici populations to some active ingredients of fungicides
Raco, Milica
During the different stages of its development, wheat is possible infected by many plant pathogens. One of the most common is Zymoseptoria tritici, the causal agent of the disease called Septoria Tritici Blotch (STB). The most common strategy in the Z. tritici disease management is treating plants with fungicides. Unfortunately, this plant pathogen as many others evolved resistance towards some of the most commonly used fungicidal classes. The aim of this study was to detect the resistance of Z. tritici to strobilurin fungicide azoxystrobin. During the April 2017, around 300 plant samples were collected from 11 geographical regions in the Czech Republic. From those plant samples, 52 monosporic Z. tritici isolates were obtained and tested for the presence of the resistance. The fungicide resistance was measured and detected by laboratory agar dilution biotest and molecular methods as a CAPS marker (Cleaved Amplified Polymorphic Sequences) and qPCR (Quantitative Polymerase Chain Reaction). By agar dilution biotest, resistance to azoxystrobin was confirmed in 54% of total 52 analysed isolates. By CAPS marker analysis, the presence of G143A mutant allele of the mitochondrial cytochrome b gene, linked to the fungicide resistance, was confirmed in all selected isolates marked as resistant in the biotest. The DNA of one infected leaf sample collected from the field marked as 17Zt212 was isolated and tested by the qPCR method. In the field sample (17Zt212), the 4% of the Z. tritici population was found to be resistant to fungicide azoxystrobin.
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Telestes perspective on the karstic poljes of eastern Herzegovina
Doulíková, Tereza ; Vukićová, Jasna (advisor) ; Choleva, Lukáš (referee)
The Dinaric karst region in the Balkans is one of the hot spots of biodiversity with a high number of endemic freshwater fish. The major cause of the high degree of endemism are numerous paleoclimatic and geological events that have affected the formation of the entire area. Flows of karst poljes represent a specific ecosystem to which some fishes have adapted. The poljes have been periodically flooded and these floods may activate different underground channels, which lead to interconnection of poljes. These fish species spend a part of the year in surface water and a part in groundwater and they may use the underground flows between poljes for migration. The aim of this thesis is to evaluate the genetic variability of two endemic fish species of the genus Telestes living in karst poljes in the region of eastern Herzegovina, and to detect a possible current gene flow between populations of these species due to the connection of underground flows. For this purpose, the DNA from 102 individuals from five different localities was isolated. The mitochondrial marker cytochrom b and 16 microsatellite loci were used for the analyses. The results point to very low variability between species and populations. Based on mitochondrial marker analysis, no link between populations of the species was detected,...
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Evolutionary relationships within genus Barbus (Cyprinidae) with emphasis on Greece, and biogeography of Greek lineages
Kyralová, Eva ; Vukićová, Jasna (advisor) ; Kalous, Lukáš (referee)
Evolutionary relationships between Barbus species have been already studied in the past, but most of the studies were based only on mitochondrial DNA, there is no detailed study based on nuclear markers. This is mainly due to the fact that Barbus species are tetraploid. The western part of Greece has been studied insufficiently, and moreover a greater diversity of freshwater ichthyofauna is expected here. Greece is one of the hotspots of biodiversity. Greek river system is characterized by a significant proportion of endemic species of freshwater fishes. In this work evolutionary relationships between Barbus species were studied, with focus on diversity of Greek lineages. The geographical distribution of Barbus species has been also revised. In total, 192 individuals were analyzed, 156 individuals were from 40 Greek localities and another 36 Barbus species were from other areas of distribution of the genus. Dataset was supplemented with avaible published sequences. For the phylogenetic analysis mitochondrial gene cytochrom b, 1st intron of ribosomal protein gene S7 and 2nd intron of gene beta-actin were used. For both nuclear markers paralog-specific primers were used. The analysis of cytochrom b revealed several well-supported lines: 1. species of southwestern Mediterranean (B. meridionalis and B....
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Population structure of flower chafer Oxythyrea funesta (Poda, 1761) and phylogeny of the genus Oxythyrea Mulsant, 1842
Vondráček, Dominik ; Šípek, Petr (advisor) ; Bezděk, Aleš (referee)
Eleven species are distinguished in the genus Oxythyrea Mulsant, 1842 (Coleoptera: Scarabaeidae) nowadays. They are not divided into subspecies. Diversity of the genus is concentrated in the Mediterranean and Oxythyrea funesta (Poda, 1761) inhabit a wide area in the western Palearctic Region. It was observed in last decades, that O. funesta retreated from central Europe to south and then recolonized it back including new areas in northern regions. Master thesis is focused on resolving population structure of O. funesta and partial phylogeny of the genus Oxythyrea using molecular genetic methods. 145 individuals of O. funesta and 15 individuals of five other species of the genus Oxythyrea appear in analysis. We acquired sequences of mitochondrial genes cytochrome oxidase I (807 bp), cytochrome b (381 bp) and nuclear gene internal transcribed spacer 1 (946 bp) from these specimens. The results of phylogenetic analysis confirmed so far the only one existing interpretation of relationships within the genus Oxythyrea based on morphological data. We also confirmed complicated relationships between O. funesta and O. pantherina, which also appear in the historical development of their taxonomy. We detected different genetic lineage in Sicily, southern Italy and Tunisia using phylogenetic trees and haplotype...
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Colonisation of islands by the insectivorous mammals
Matějů, Petr ; Černá Bolfíková, Barbora (advisor) ; Kristýna, Kristýna (referee)
Biological invasions are a serious problem worldwide. Besides the natural colonizations mediated by tectonic movements or formation of a land bridge connection, there are also the artificial ones. Humans can deliberately or undeliberately translocate species across ecosystems. Recently, mainly because of the buisness and tourism there is a dramatical increase in human-mediated biological invasions. Many authors, who discussed invasions in the past, were focused on rodents. Despite its severe impact on the ecosystems the topic of insectivorous mammals remains relatively untouched by scientists so far. Practical part of this thesis is focused on the Northern white-breasted hedgehog (Erinaceus roumanicus) and his dispersal in the Mediterranean area. Mitochondrial control region sequences of 28 samples were analyzed and compared to already published data from GenBank. Discussion was made through phylogenetical analysis. Main topics of discussion were focused on a possible contemporaneity and a course of transfer of the gene flow. Most of the samples showed haplotype similarity with individuals occupying the closest mainland. On the other hand samples from Skyros did not go with the trend. They matched with haplotype from Crete.
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Genetic diversity of European greyling (Thymallus thymallus) in the Czech Republic based on mitochondrial DNA variation
HAVELKA, Miloš
Goal of this Thesis is the comparison of the Grayling˘s genetic diversity. The complete mitochondrial DNA (mtDNA) control region (1083 base pairs) and gene for cytochrom B (1076 base pairs) were sequenced in 147 European grayling (Thymallus thymallus), from 21 populations in Czech Republic, Slovakia and Bosnia. In samples, 17 haplotypes were detected with average haplotype diversity Hd = 0,5480 and genic differentiation (FST) from 0,001 to the 0.9341. The most common haplotype TH1 was detected in 92 samples. An inferred intraspecific phylogenetic tree revealed three well-separated clades. One clade was represented by Danubian haplotypes from Slovakia. Second highly divergent clade contained individuals from river Vrbas in Bosnia, and the last biggest clade included haplotypes of all three sea basins from Czech Republic. We suppose that the gained results will be later utilized to the choice of suitable conservation measures that will lead to stabilization of the state of ancestral population of this ever more rare species in our region.
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