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Proteome and Metabolome Changes in Selected Organisms under Stress
Halienová, Andrea ; Kráčmar, Stanislav (referee) ; Čertík, Milan (referee) ; Šucman, Emanuel (referee) ; Márová, Ivana (advisor)
Living conditions of every organism are influenced by various factors at this time. Some of them have positive effect on organism, some negative. Basic condition for surviving is the ability to resist and adapt to changing metabolic and living conditions. Every single stress effect can lead to changes in metabolism but organisms have ability to develope sufficient mechanisms for stress response. Some of them are similar for all living organisms (enzyme production, endogenous primary stress metabolites) some of them are specific for certain organism or stress type. Cell stress response can be observed on different levels (proteomic, genomic, metabolomic). In proper conditions it can be used indrustrially. In this work, influences of various stress factors were studied. These factors were applied on selected organisms – carotenogenic yeast and plant materials. Yeast stress response was induced by osmotic and oxidation stress factors. Changes on proteomic level and in production of selected secondary metabolites were observed. Proteome was analyzed by 1D and 2D electrophoresis with subsequent analysis of proteins by mass spectrometry. Yeast strain Rhodotorula glutinis CCY 20-2-26 showed the best adaptation to stress factors, which was moreover accompanied by overproduction of carotenoids. This finding can be premise for next industrial production of carotenoids. In plant samples predominantly enzymes and metabolites involved in antioxidant response were studied.
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Molecular Study of Intracellular Changes as Response of Microorganisms to Environment
Čarnecká, Martina ; Kráčmar, Stanislav (referee) ; Márová, Ivana (advisor)
Kvasinky žijú v neustále sa meniacom prostredí. Aby prežili tieto výkyvy ich okolitého prostredia, musia sa vedieť rýchlo a efektívne prispôsobiť novým podmienkam. Jedným z aspektov takejto bunkovej adaptácie je reorganizácia génovej expresie na program vyžadovaný pre rast v novom prostredí. Dôsledkom tejto reorganizácie genómu sú zmeny v metabolizme a fyziológií kvasiniek. Molekulárna odpoveď bunky určuje či sa organizmus adaptuje, prežije alebo zahynie. Predložená dizertačná práca sa zaoberá štúdiom vplyvu environmentálnych zmien na genóm a metabolóm vybraných karotenogénnych kvasiniek. Kvasinky boli kultivované jednak za optimálnych podmienok a jednak v oxidačnom a ozmotickom strese a na rôznych odpadových materiáloch (srvátke, zemiakovom odpade a pod.). V prítomnosti stresu bola pozorovaná zvýšená produkcia biologicky významných karotenoidov. Takáto obohatená biomasa môže nájsť svoje uplatnenie v biotechnologickom priemysle, napr. ako krmivo pre zvieratá. Možnosťou štúdia odozvy mikroorganizmov na environmentálny stres je aj príprava transformantov s deléciou vybraných génov a ich analýza. V ďalšej časti práce bola prevedená delécia vybraných génov kvasinky Schizosaccharomyces pombe. Zvolená technika je založená na knockoute konštruktov, ktoré obsahujú regióny homologické s deletovaným génom. Analýzou vytvorených transformantov boli identifikované proteíny potrebné pri meiotickej segregácií chromozómov.
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Experimental cultivation systems in root system research
Střelec, Petr ; Soukup, Aleš (advisor) ; Lhotáková, Zuzana (referee)
The growing awareness of plant root importance has contributed to the continuous development of cultivation methods that facilitate more efficient and effective root research. Due to their sessile nature, plants rely extensively on roots for water and ion absorption (Meister et al., 2014). As a result, plant roots must adjust to an array of unfavorable conditions such as salinity, drought, and high temperatures. To better understand root response and promote agricultural development, researchers simulate various stressors in controlled conditions. More recently developed transparent soils and soilless cultures aim to overcome the limitations of traditional soil cultivation, which include imprecise variable control, heterogeneous conditions, and destructive root sampling (Gregory et al., 2009). When planning an experiment, it is crucial to select an appropriate cultivation method to ensure success. The aim of this thesis is to provide a comprehensive overview of the benefits and limitations of commonly used cultivations techniques in plant stress research. Transparent soil reliably mimics the mechanical properties of soil whilst allowing for easy root access and use of numerous visualization techniques. On the other hand, it still maintains the need for a larger cultivation area just like soil. The...
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Plant adaptation to climate change
Koláříková, Veronika ; Münzbergová, Zuzana (advisor) ; Sklenář, Petr (referee)
Climate change represents important selective force for plants. They have to deal with this change otherwise they are facing the risk of extinction. Understanding the mechanism which plants use to avoid the risk is essential for effective conservation of biodiversity. The climate change can exceed the tolerance of plants to abiotic factors. The plants can react to the changes by migration, phenotypic plasticity, evolutionary adaption or by a combination of these strategies. Phenotypic plasticity and evolutionary adaption are manifested by a change of physiology, morphology and/or phenology of plants. This work summarizes the findings of these ecological and evolutionary strategies and also presents methods used for studying species response to climate change. Powered by TCPDF (www.tcpdf.org)
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Contribution of arbuscular mycorrhiza to ecosystem services in agroecosystems
Šabatková, Zuzana ; Janoušková, Martina (advisor) ; Kohout, Petr (referee)
Arbuscular mycorrhizal fungi are significant plant mutualists providing their host plants with many benefits. For efficient use of arbuscular mycorrhiza in agricultural systems, it is important to understand factors, which can influence the beneficial effects of the symbiosis, and how arbuscular mycorrhizal fungi alter plant physiological mechanisms. If used correctly, arbuscular mycorrhizal fungi could importantly contribute to various ecosystem services in agroecosystems and thus alleviate yield losses and decrease the negative impact of agriculture on ecosystems. This thesis summarizes the impact of arbuscular mycorrhizal fungi on crop plants in agroecosystems, their occurence in agricultural systems, particularly in arable soils, as well as their contribution to selected ecosystem services in agroecosystems. Key words: arbuscular mycorrhizal fungi, ecosystem services, agroecosystem, soil formation, environmental stress, plant resistence
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Plant adaptation to climate change
Koláříková, Veronika ; Münzbergová, Zuzana (advisor) ; Sklenář, Petr (referee)
Climate change represents important selective force for plants. They have to deal with this change otherwise they are facing the risk of extinction. Understanding the mechanism which plants use to avoid the risk is essential for effective conservation of biodiversity. The climate change can exceed the tolerance of plants to abiotic factors. The plants can react to the changes by migration, phenotypic plasticity, evolutionary adaption or by a combination of these strategies. Phenotypic plasticity and evolutionary adaption are manifested by a change of physiology, morphology and/or phenology of plants. This work summarizes the findings of these ecological and evolutionary strategies and also presents methods used for studying species response to climate change. Powered by TCPDF (www.tcpdf.org)
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Proteome and Metabolome Changes in Selected Organisms under Stress
Halienová, Andrea ; Kráčmar, Stanislav (referee) ; Čertík, Milan (referee) ; Šucman, Emanuel (referee) ; Márová, Ivana (advisor)
Living conditions of every organism are influenced by various factors at this time. Some of them have positive effect on organism, some negative. Basic condition for surviving is the ability to resist and adapt to changing metabolic and living conditions. Every single stress effect can lead to changes in metabolism but organisms have ability to develope sufficient mechanisms for stress response. Some of them are similar for all living organisms (enzyme production, endogenous primary stress metabolites) some of them are specific for certain organism or stress type. Cell stress response can be observed on different levels (proteomic, genomic, metabolomic). In proper conditions it can be used indrustrially. In this work, influences of various stress factors were studied. These factors were applied on selected organisms – carotenogenic yeast and plant materials. Yeast stress response was induced by osmotic and oxidation stress factors. Changes on proteomic level and in production of selected secondary metabolites were observed. Proteome was analyzed by 1D and 2D electrophoresis with subsequent analysis of proteins by mass spectrometry. Yeast strain Rhodotorula glutinis CCY 20-2-26 showed the best adaptation to stress factors, which was moreover accompanied by overproduction of carotenoids. This finding can be premise for next industrial production of carotenoids. In plant samples predominantly enzymes and metabolites involved in antioxidant response were studied.
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Molecular Study of Intracellular Changes as Response of Microorganisms to Environment
Čarnecká, Martina ; Kráčmar, Stanislav (referee) ; Márová, Ivana (advisor)
Kvasinky žijú v neustále sa meniacom prostredí. Aby prežili tieto výkyvy ich okolitého prostredia, musia sa vedieť rýchlo a efektívne prispôsobiť novým podmienkam. Jedným z aspektov takejto bunkovej adaptácie je reorganizácia génovej expresie na program vyžadovaný pre rast v novom prostredí. Dôsledkom tejto reorganizácie genómu sú zmeny v metabolizme a fyziológií kvasiniek. Molekulárna odpoveď bunky určuje či sa organizmus adaptuje, prežije alebo zahynie. Predložená dizertačná práca sa zaoberá štúdiom vplyvu environmentálnych zmien na genóm a metabolóm vybraných karotenogénnych kvasiniek. Kvasinky boli kultivované jednak za optimálnych podmienok a jednak v oxidačnom a ozmotickom strese a na rôznych odpadových materiáloch (srvátke, zemiakovom odpade a pod.). V prítomnosti stresu bola pozorovaná zvýšená produkcia biologicky významných karotenoidov. Takáto obohatená biomasa môže nájsť svoje uplatnenie v biotechnologickom priemysle, napr. ako krmivo pre zvieratá. Možnosťou štúdia odozvy mikroorganizmov na environmentálny stres je aj príprava transformantov s deléciou vybraných génov a ich analýza. V ďalšej časti práce bola prevedená delécia vybraných génov kvasinky Schizosaccharomyces pombe. Zvolená technika je založená na knockoute konštruktov, ktoré obsahujú regióny homologické s deletovaným génom. Analýzou vytvorených transformantov boli identifikované proteíny potrebné pri meiotickej segregácií chromozómov.
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