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Origin, degeneration and detection of sex chromosomes
Jílková, Klára ; Král, Jiří (advisor) ; Kratochvíl, Lukáš (referee)
Sex chromosomes evolved from a pair of autosomes and they are differentiated as a result of supression of recombination. This process leads to a successive degradation of odd sex chromosome (alosome), which is becoming genetically inert finally or even excluded. Fundamental processes taking part in degeneration of alosome are Muller's ratchet, genetic hitchhiking, background selection, accumulation of transposable elements and constitutive heterochromatin. Indeed, these processes take part in either degeneration of both Y or W chromosomes. Remarkably, these alosomes show different rates of degeneration, most probably due to 1) different structure of male and female gonads as well as 2) different course of gametogenesis in both sexes. Furthermore, rate of alosome degeneration is usually lower in plants because they are haploid during the major part of life cycle. Other mechanisms of sex chromosome evolution involve rearrangements between autosomes and gonosomes, nondisjunctions and fissions of original sex chromosomes, transformation of B chromosomes into sex chromosomes or non-random segregation of autosomes with sex chromosomes. Other phenomenon that appears in sex chromosome evolution is transition between XY/XX and ZW/ZZ systems or transition between chromosomal sex determination and epigamy. Actually,...
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Variation and interspecific hybridization of Elymus repens and E. hispidus
Bartošová, Romana ; Urfus, Tomáš (advisor) ; Chrtek, Jindřich (referee)
Family Poaceae is one of the most derived groups of monocots. Major mechanisms of grasses evolution and particularly of tribe Triticeae and genus Elymus are polyploidisation and hybridisation. Presented diploma thesis assessed frequency and direction of hybridisation between Elymus hispidus and E. repens in Central Europe. Thesis also evaluated evolutionary importance (significantly higher ratio of hybridisation and polyploidisation) of hybrid swarm in Nature Reserve Čertoryje (Bílé Karpaty Mountains/the White Carpathians, the Czech Republic). Putative hybridizing populations were 14,4 % of sampled localities, i.e. direct presence hybrids (7,9 %) or both parental species (8,4 %). Aneuploids and higher polyploids were found exclusively in Čertoryje hybrid swarm, except one putative DNA nonaploid plant. The genome in situ hybridisation confirmed and improved knowledge of particular species/cytotypes chromosome counts and further specified their genome composition. GISH newly characterized genome composition of interspecific hybrids and higher allopolyploids and revealed their heterogeneous origin. Flow cytometry revealed continuum of absolute genome sizes among parental species and their hybrid. The continuum was rather asymmetric in direction towards E. hispidus. Model hybrid swarm Čertoryje produce...
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Variation and interspecific hybridization of Elymus repens and E. hispidus
Bartošová, Romana ; Urfus, Tomáš (advisor) ; Chrtek, Jindřich (referee)
Family Poaceae is one of the most derived groups of monocots. Major mechanisms of grasses evolution and particularly of tribe Triticeae and genus Elymus are polyploidisation and hybridisation. Presented diploma thesis assessed frequency and direction of hybridisation between Elymus hispidus and E. repens in Central Europe. Thesis also evaluated evolutionary importance (significantly higher ratio of hybridisation and polyploidisation) of hybrid swarm in Nature Reserve Čertoryje (Bílé Karpaty Mountains/the White Carpathians, the Czech Republic). Putative hybridizing populations were 14,4 % of sampled localities, i.e. direct presence hybrids (7,9 %) or both parental species (8,4 %). Aneuploids and higher polyploids were found exclusively in Čertoryje hybrid swarm, except one putative DNA nonaploid plant. The genome in situ hybridisation confirmed and improved knowledge of particular species/cytotypes chromosome counts and further specified their genome composition. GISH newly characterized genome composition of interspecific hybrids and higher allopolyploids and revealed their heterogeneous origin. Flow cytometry revealed continuum of absolute genome sizes among parental species and their hybrid. The continuum was rather asymmetric in direction towards E. hispidus. Model hybrid swarm Čertoryje produce...
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Cytogenetics of selected groups of ray-finned fishes (Actinopterygii): Evolutionary-ecological questions associated with the dynamics of repetitive sequences and the occurrence of polyploidy
Sember, Alexandr ; Ráb, Petr (advisor) ; Marec, František (referee) ; Král, Jiří (referee)
Ray-finned fishes (Actinopterygii) exhibit the greatest biodiversity among vertebrates. The vast majority of extant actinopterygian fish species belong to clade Teleostei - a lineage whose significant evolutionary success might have resulted from a teleost specific whole- genome duplication (TSGD) that occurred at the onset of this group, subsequent to its divergence from the rest of actinopterygian lineages. Despite the growing body of sequenced fish genomes and analyses of their transcriptomes, the largest contribution to understanding fish genomes comes from analyses of DNA content and from cytogenetics. Genomes of ray-finned fishes and especially those of Teleostei exhibit vast diversity and rapid dynamics of repetitive DNA sequences whose variability is reflected in a wide range of fish genome sizes and in the dynamics behind karyotype differentiation. Therefore, ray-finned fishes offer a unique opportunity to study genome variability as a driving force underlying morphological and ecological diversification, evolution and adaptation. Particularly, the mapping of repetitive DNA sequences by means of fluorescence in situ hybridization (FISH) has proven to be a very useful and informative approach during the last two decades and contributed greatly to our understanding of the fish genome...
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Use of In Situ Hybridization to study evolution in plants
Vlčková, Zuzana ; Münzbergová, Zuzana (advisor) ; Šurinová, Mária (referee)
The main focus of this thesis is in situ hybridization method and its impacts in modern cytology. The first chapter of the thesis describes the method itself and its types, defines and enumerates fundamental terms of the method, describes the steps of preparation and actual experiments in detail and explains the process of evaluation and interpretation of results. Following chapter describes several cases studies on plants performed using ISH. It describes use of ISH to recognize introgression lines among hybrids and to determine their fertility, to study polyploids and evolution of the nonaploids and to study repetitive sequences in telomeres of lily plants. In the next chapter the thesis describes Vicia cracca agg. from morphological but mainly systematical point of view. The thesis is concluded by suggestion of possible utilization of genomic in situ hybridisation in order to reveal the pregenitors of tetraploid V. cracca and the evolution within the aggregate.
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Origin, degeneration and detection of sex chromosomes
Jílková, Klára ; Král, Jiří (advisor) ; Kratochvíl, Lukáš (referee)
Sex chromosomes evolved from a pair of autosomes and they are differentiated as a result of supression of recombination. This process leads to a successive degradation of odd sex chromosome (alosome), which is becoming genetically inert finally or even excluded. Fundamental processes taking part in degeneration of alosome are Muller's ratchet, genetic hitchhiking, background selection, accumulation of transposable elements and constitutive heterochromatin. Indeed, these processes take part in either degeneration of both Y or W chromosomes. Remarkably, these alosomes show different rates of degeneration, most probably due to 1) different structure of male and female gonads as well as 2) different course of gametogenesis in both sexes. Furthermore, rate of alosome degeneration is usually lower in plants because they are haploid during the major part of life cycle. Other mechanisms of sex chromosome evolution involve rearrangements between autosomes and gonosomes, nondisjunctions and fissions of original sex chromosomes, transformation of B chromosomes into sex chromosomes or non-random segregation of autosomes with sex chromosomes. Other phenomenon that appears in sex chromosome evolution is transition between XY/XX and ZW/ZZ systems or transition between chromosomal sex determination and epigamy. Actually,...
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