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Bioinformatic Tool for Classification of Bacteria into Taxonomic Categories Based on the Sequence of 16S rRNA Gene
Valešová, Nikola ; Hon, Jiří (referee) ; Smatana, Stanislav (advisor)
Tato práce se zabývá problematikou automatizované klasifikace a rozpoznávání bakterií po získání jejich DNA procesem sekvenování. V rámci této práce je navržena a popsána nová metoda klasifikace založená na základě segmentu 16S rRNA. Představený princip je vytvořen podle stromové struktury taxonomických kategorií a používá známé algoritmy strojového učení pro klasifikaci bakterií do jedné ze tříd na nižší taxonomické úrovni. Součástí práce je dále implementace popsaného algoritmu a vyhodnocení jeho přesnosti predikce. Přesnost klasifikace různých typů klasifikátorů a jejich nastavení je prozkoumána a je určeno nastavení, které dosahuje nejlepších výsledků. Přesnost implementovaného algoritmu je také porovnána s několika existujícími metodami. Během validace dosáhla implementovaná aplikace KTC více než 45% přesnosti při predikci rodu na datových sadách BLAST 16S i BLAST V4. Na závěr je zmíněno i několik možností vylepšení a rozšíření stávající implementace algoritmu.
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Data Mining with Python
Krestianková, Tamara ; Burgetová, Ivana (referee) ; Zendulka, Jaroslav (advisor)
This thesis deals with principles of data mining process, available Python packages for data mining and a demonstration of Python script capable of data analyisis focused on classification techniques. Created classifiers are able to classify subjects into two groups - healthy people and people suffering from Parkinson's disease - based on their biomedical vocal analysis data.
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Utilization of artificial intelligence in technical diagnostics
Konečný, Antonín ; Huzlík, Rostislav (referee) ; Zuth, Daniel (advisor)
The diploma thesis is focused on the use of artificial intelligence methods for evaluating the fault condition of machinery. The evaluated data are from a vibrodiagnostic model for simulation of static and dynamic unbalances. The machine learning methods are applied, specifically supervised learning. The thesis describes the Spyder software environment, its alternatives, and the Python programming language, in which the scripts are written. It contains an overview with a description of the libraries (Scikit-learn, SciPy, Pandas ...) and methods — K-Nearest Neighbors (KNN), Support Vector Machines (SVM), Decision Trees (DT) and Random Forests Classifiers (RF). The results of the classification are visualized in the confusion matrix for each method. The appendix includes written scripts for feature engineering, hyperparameter tuning, evaluation of learning success and classification with visualization of the result.
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Genetic Programming in Prediction Tasks
Machač, Michal ; Mrázek, Vojtěch (referee) ; Sekanina, Lukáš (advisor)
This thesis introduces various machine learning algorithms which can be used in prediction tasks based on regression. Tree genetic programming and linear genetic programming are explained more thoroughly. Selected machine learning algorithms (linear regression, random forest, multilayer perceptron and tree genetic programming) are compared on publicly available datasets with the use of scikit-learn and gplearn libraries. A core part of this project is a new implementation of linear genetic programming which was developed in C++, tested on common symbolic regression problems and then evaluated on real datasets. Results obtained with the proposed system are compared with the results obtained with gplearn.
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Data Analysis of a Company Producing Medical Supplies
Kulhánková, Monika ; Bartík, Vladimír (referee) ; Burgetová, Ivana (advisor)
This bachelor's thesis deals with the analysis of the company's sales data, specifically the classification of the customer's type according to his sales data. It provides a theoretical introduction to data mining. It describes the classification process and methods for creating classifiers and presents the CRISP-DM model. This thesis describes the provided data sets, from which the relevant attributes are selected. The data are preprocessed and used in the creation and testing of classification models. The result of this thesis is a comparison of the achieved results.
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Semantic Similarity of Texts
Hajdin, Martin ; Otrusina, Lubomír (referee) ; Smrž, Pavel (advisor)
This paper deals with the determination of the semantic similarity of texts focusing on categorization of web documents in this case bookmarks. The part of the process is a theoretical overview of methods for system implementation. It describes the design and implementation of the various methods used in the system, too. This paper also deals with the evaluation of various methods where the chosen method are tested according to specified criteria.
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Web Simulator of Football Leagues and Championships
Urbanczyk, Martin ; Holkovič, Martin (referee) ; Hynek, Jiří (advisor)
This thesis is about the creation of a simulator of football leagues and championships. I studied the problematics of football competitions and their systems and also about the base of machine learning. There was also an analysis of similar and existing solutions and I took inspiration for my proposal from them. After that, I made the design of the whole simulator structure and of all of its key parts. Then the simulator was implemented and tested. The application allows simulating top five competitions in UEFA club coefficients rating.
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Data Analysis of a Company Producing Medical Supplies
Kulhánková, Monika ; Bartík, Vladimír (referee) ; Burgetová, Ivana (advisor)
This bachelor's thesis deals with the analysis of the company's sales data, specifically the classification of the customer's type according to his sales data. It provides a theoretical introduction to data mining. It describes the classification process and methods for creating classifiers and presents the CRISP-DM model. This thesis describes the provided data sets, from which the relevant attributes are selected. The data are preprocessed and used in the creation and testing of classification models. The result of this thesis is a comparison of the achieved results.
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Utilization of artificial intelligence in technical diagnostics
Konečný, Antonín ; Huzlík, Rostislav (referee) ; Zuth, Daniel (advisor)
The diploma thesis is focused on the use of artificial intelligence methods for evaluating the fault condition of machinery. The evaluated data are from a vibrodiagnostic model for simulation of static and dynamic unbalances. The machine learning methods are applied, specifically supervised learning. The thesis describes the Spyder software environment, its alternatives, and the Python programming language, in which the scripts are written. It contains an overview with a description of the libraries (Scikit-learn, SciPy, Pandas ...) and methods — K-Nearest Neighbors (KNN), Support Vector Machines (SVM), Decision Trees (DT) and Random Forests Classifiers (RF). The results of the classification are visualized in the confusion matrix for each method. The appendix includes written scripts for feature engineering, hyperparameter tuning, evaluation of learning success and classification with visualization of the result.
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Genetic Programming in Prediction Tasks
Machač, Michal ; Mrázek, Vojtěch (referee) ; Sekanina, Lukáš (advisor)
This thesis introduces various machine learning algorithms which can be used in prediction tasks based on regression. Tree genetic programming and linear genetic programming are explained more thoroughly. Selected machine learning algorithms (linear regression, random forest, multilayer perceptron and tree genetic programming) are compared on publicly available datasets with the use of scikit-learn and gplearn libraries. A core part of this project is a new implementation of linear genetic programming which was developed in C++, tested on common symbolic regression problems and then evaluated on real datasets. Results obtained with the proposed system are compared with the results obtained with gplearn.
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