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Characterization of new HILIC stationary phases
Vaclová, Jana ; Kozlík, Petr (advisor) ; Kubíčková, Anna (referee)
Hydrophilic interaction liquid chromatography is a frequently used separation method for analysis of polar compounds. It is an alternative method to reversed-phase chromatography, where these compounds show insufficient or very weak retention. A high number of stationary phases are currently available for HILIC and new ones are still being developed. The aim of this diploma thesis was to characterize and compare three relatively new HILIC columns containing an unmodified silica gel (HILIC-A), aminopropyl modified silica (HILIC-B) and polyhydroxyl chain modified silica (HILIC-N) as stationary phase. Based on the study of the effect of acetonitrile content in mobile phase on the retention of a model set of peptides, a multimodal retention mechanism was demonstrated. Analysis of 18 model analytes with different pKa values showed, that the composition of aqueous part of mobile phase (buffer), more specifically it's concentration and pH value, has a significant impact on retention of ionized analytes and peptides on the studied stationary phases. A significant contribution of ionic interactions to retention was observed on HILIC-B and HILIC-A columns. The retention of basic compounds on the HILIC-B column increased with increasing ionic strength, while it decreased on the HILIC-A column. Increasing the...
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Peptide hormones affecting the food intake and their analogs as potential drugs for treatment of obesity
Nagelová, Veronika ; Maletínská, Lenka (advisor) ; Vybíral, Stanislav (referee)
Obesity is nowadays a major global health problem. Every year amount of obese (BMI > 30 kg . m-2 ) and overweight (BMI > 25 kg . m-2 ) people increases. Obesity is not just a cosmetic problem, but it leads to many serious health complications, particularly cardiovascular diseases, metabolic diseases etc. We can define obesity as an excessive amount of body fat. The development of obesity is often influenced by energy intake, which overrides the energy expenditure. Many studies are currently describe the influence of various substances that could potentially act as antiobesity drugs. Peptide hormones, which are engaged in this work, can be divided to the long-term (leptin, insulin, ghrelin) and short-term (e.g. cholecystokinin, glucagon like peptide 1, peptide YY, CART peptides, melanocortin system, neuropeptide Y and melanin concentrating hormone) acting. Peptides can be also divided according to their effect on food intake to the anorexigenic and orexigenic. Anorexigenic peptides reduce food intake, orexigenic do the reverse.
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Nanostructured Modifcation of Material Surfaces for Controlled Cell Cultivation
Kotelnikov, Ilya ; Proks, Vladimír (advisor) ; Chytil, Petr (referee) ; Šebestová Janoušková, Olga (referee)
Commercial media and surfaces for cell cultivation do not promote conditions for cell cultivation and proliferation with specific interactions cell-material surface. The aim of this thesis is developing surfaces for cell cultivation which mimic conditions in living tissues. The approach introduced in this thesis is based on applying biomimetic peptide ligands on inert supporting materials with non-fouling properties. Considering that a choice of a ligand sequence and distance between peptides can dramatically influence the outcome, a few model peptides with varying parameters were synthesized and investigated. The cell adhesive peptides were synthesized by solid phase peptide synthesis and scrambled peptides were synthesized and tested as well. Spatial deposition of peptides is another highly important point of study. The 'click'- reaction was used to successfully immobilize the peptides on produced surfaces. The distance between the peptide molecules on the surfaces was controlled by their concentration in a reaction mixture. The reference samples were immobilized with radiolabeled peptides for quantitative estimation of the peptides present. Then, the materials with different types of peptides and range of concentrations were examined via cultivation of cell cultures. The experiments were focused on...
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Characterisation and elimination of compounds difficult to remove during water treatment
Čermáková, Lenka
The Ph.D. thesis deals with the characterization of algal organic matter (AOM), which is difficult to remove in water treatment, and on the basis of AOM character, various methods for its elimination, e.g. coagulation, oxidation with subsequent coagulation and adsorption onto activated carbon are assesed. Special emphasis is placed on identifying the optimal conditions of the processes and on describing the mechanisms and interactions involved. In terms of anthropogenic micropollutants, the thesis deals with the highly topical issue of the occurrence of microplastics in water. It was found that the removal efficiency of the individual AOM components varies substantially depending on the elimination method used. The identified optimum conditions of individual methods and especially the mechanisms that apply to the removal of target substances varied widely. The non-proteinaceous fraction of AOM was removed with very low efficiency (max. 25%) by conventional coagulation even under optimized conditions (pH 6.6- 7.5 for aluminium sulfate as the coagulating agent and pH 7.5-9.0 for polyaluminium chloride) and it was given by the high content of low molecular weight (LMW) substances that are difficult to coagulate. The dominant coagulation mechanism was adsorption onto aluminium hydroxide precipitates....
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Synthesis of peptidic inhibitors targeting PA-PB1 interface of influenza RNA polymerase
Palacková, Miroslava ; Machara, Aleš (advisor) ; Veselý, Jan (referee)
The submitted Thesis deals with preparation of a hexapeptides inhibiting protein-protein interaction of PA-PB1 subunits of influenza RNA polymerase. Crucial part of the Thesis represent modifications of particular small hexapeptide at its two "hot spots". It means at positions that significantly contribute to the binding of both subunits. These modifications resulted in preparation of two series of distinct hexapeptides. With regards to the fact that one designed hexapeptide contains unnatural and commercially unavailable amino acids this amino acid had to be prepared from simple building blocks. Apart from aforementioned work the Thesis also covers effort to prepared bicyclic peptide that contains sequences of peptidic inhibitor of protein-protein interactions and also cell-penetration peptide. Key words: synthesis, peptides, inhibitors, influenza, polymerase
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Characterisation and elimination of compounds difficult to remove during water treatment
Čermáková, Lenka ; Pivokonský, Martin (advisor) ; Sochorová, Helena (referee) ; Brányik, Tomáš (referee)
The Ph.D. thesis deals with the characterization of algal organic matter (AOM), which is difficult to remove in water treatment, and on the basis of AOM character, various methods for its elimination, e.g. coagulation, oxidation with subsequent coagulation and adsorption onto activated carbon are assesed. Special emphasis is placed on identifying the optimal conditions of the processes and on describing the mechanisms and interactions involved. In terms of anthropogenic micropollutants, the thesis deals with the highly topical issue of the occurrence of microplastics in water. It was found that the removal efficiency of the individual AOM components varies substantially depending on the elimination method used. The identified optimum conditions of individual methods and especially the mechanisms that apply to the removal of target substances varied widely. The non-proteinaceous fraction of AOM was removed with very low efficiency (max. 25%) by conventional coagulation even under optimized conditions (pH 6.6- 7.5 for aluminium sulfate as the coagulating agent and pH 7.5-9.0 for polyaluminium chloride) and it was given by the high content of low molecular weight (LMW) substances that are difficult to coagulate. The dominant coagulation mechanism was adsorption onto aluminium hydroxide precipitates....
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Characterization of new HILIC stationary phases
Vaclová, Jana ; Kozlík, Petr (advisor) ; Kubíčková, Anna (referee)
Hydrophilic interaction liquid chromatography is a frequently used separation method for analysis of polar compounds. It is an alternative method to reversed-phase chromatography, where these compounds show insufficient or very weak retention. A high number of stationary phases are currently available for HILIC and new ones are still being developed. The aim of this diploma thesis was to characterize and compare three relatively new HILIC columns containing an unmodified silica gel (HILIC-A), aminopropyl modified silica (HILIC-B) and polyhydroxyl chain modified silica (HILIC-N) as stationary phase. Based on the study of the effect of acetonitrile content in mobile phase on the retention of a model set of peptides, a multimodal retention mechanism was demonstrated. Analysis of 18 model analytes with different pKa values showed, that the composition of aqueous part of mobile phase (buffer), more specifically it's concentration and pH value, has a significant impact on retention of ionized analytes and peptides on the studied stationary phases. A significant contribution of ionic interactions to retention was observed on HILIC-B and HILIC-A columns. The retention of basic compounds on the HILIC-B column increased with increasing ionic strength, while it decreased on the HILIC-A column. Increasing the...
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Synthesis and Study of Nano-Structured Perovskites for Applications in Organic Electronics
Jančík Procházková, Anna ; Kuřitka, Ivo (referee) ; Částková, Klára (referee) ; Krajčovič, Jozef (advisor)
Nanočástice perovskitů halogenidů kovů vykazují unikátní vlastnosti, především výjimečně vysoké hodnoty kvantových výtěžků fluorescence, které předurčují tyto materiály pro aplikace v optoelektronických a fotonických zařízeních. Tato práce popisuje přípravu nanočástic perovskitů halogenidů kovů pomocí stabilizačních činidel inspirovaných přírodou. Stabilizační činidla zde slouží nejen ke stabilizaci, ale i k modifikaci povrchu nanočástic za účelem zvýšení funkčnosti výsledných nanostruktur. Úvod práce popisuje optimalizaci přípravy nanočástic precipitační technikou za použití stabilizačních činidel; jako stabilizační činidlo byl zvolen adamantan-1-amin spolu s hexanovou kyselinou. Bylo prokázáno, že klíčový vliv na optické vlastnosti výsledných koloidních roztoků má volba rozpouštědel a teploty při precipitaci. Mimo jiné byl zkoumán vliv koncentrace prekurzorů na výslednou morfologii a optické vlastnosti nanočástic a jejich koloidních roztoků. V neposlední řadě byly nanočástice stabilizovány adamantan-1-aminem spolu s různými karboxylovými kyselinami a byly studovány optické vlastnosti a koloidní stabilita výsledných koloidních roztoků. V dalším kroku byly nanočástice perovskitů stabilizovány pomocí proetogenních aminokyselin L-lysinu and L-argininu. Takto stabilizované nanočástice vykazovaly úzká emisní spektra ve viditelné oblasti a kvantové výtěžky fluorescence dosahující hodnot téměř 100 %. Stabilizace nanočástic prostřednictvím postranních skupin aminokyselin byla prokázána navázáním chránící terc-butoxykarbonylové skupiny na -amino skupinu. Nanočástice stabilizované modifikovaným lysinem v průběhu jejich přípravy vykazovaly závislost optických vlastností na přítomnosti vody. Předpokládá se, že molekuly vody jsou schopné kontrolovat růst krystalové mřížky po navázání na prekurzory perovskitů a ovlivňovat tak výslednou velikost nanočástic, což vede k projevení kvantových jevů. Spojení nanočástic perovskitů s peptidy představuje nový typ materiálů kombinujících výjimečné optické vlastnosti se samoorganizačními a senzorickými vlastnostmi. Tento koncept byl představen přípravou nanočástic perovskitů stabilizovaných cyklo(RGDFK) pentapeptidem. Vzhledem k citlivosti peptidů na jejich byly nanočástice stabilizovány peptidovými nukleovými kyselinami, robustními analogy nukleových kyselin. Ke stabilizaci nanočástic byl připraven monomer a trimer peptidové nukleové kyseliny obsahující thymin jako dusíkatou bázi. Thymin byl na povrchu nanočástic dostupný k interakci s adeninem přes vodíkové můstky umožňující přenos náboje. Kombinace peptidových nukleových kyselin a perovskitů s unikátními optickými vlastnostmi otevírá aplikační možnosti zejména v oblasti optických senzorů.
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Identification of animal hair by mass spectrometry
Humpoláková, Karin ; Kučková, Štěpánka (advisor) ; Kolář, Karel (referee)
The goal of this bachelor work was to find out if it is possible to recognize mammal species by analyzing the proteins extracted from their hairs. This information could be of use, for example, in forensic science as evidence in cases of exotic animal species smuggling or it could be helpful for solving some specific criminal cases. Fur is a characteristic sign of mammals which is forming their body surface. It mainly consists of keratin, which is a fibrous protein. This bachelor thesis deals with proteomic analysis of animal hair using mass spectrometry working on MALDI-TOF (Matrix-Assisted Laser Desorption/Ionization - Time of Flight) principle. Analyzed animal hairs were collected from ten local domestic and wild animals, such as dog, goat, cat, fallow deer, sika deer, degu, horse, rabbit, roe deer and Belgian blue calf breed. For the analyses of samples that are rich in proteins a specific enzyme cleavage by trypsin was used. The proteins were cleaved into peptides, from which mass spectra were obtained by MALDI-TOF mass spectrometry. Then these spectra were evaluated by the Principal Component Analysis (PCA) method. Then the obtained aminoacid sequences of the keratins found in the individual animal hair were searched through publicly available protein database - UniProt. The aminoacid...
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