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Elaboration and introduction of the method for determination of some proteins
Hruzík, Ondřej ; Buňka, František (referee) ; RNDr.Karel Gebauer (advisor)
Core protein of aggrecan has a significant share on the correct function of articular cartilage. Its lack or structural failure could be the reason for the disfunction of the cartilage. The culture of chondrocytes taken from a pork articular cartilage was used for the study of aggrecan production. The monolayer culture method offers the model system which has enabled us to watch the aggrecan production into growth medium. The aggrecan synthesis was stimulated in the media with addition of L-methionin, L-serin and sodium selenite pentahydrate. Methionin and serin are antecedents of sulphur amino acid of cysteine, whose role is incredibly important for the correct function of core protein. Growth media and chondrocytes were analysed with the help of the automatic amino acids analyzer unit after acid or oxidative hydrolysis. The analyse established the amino acid representation. The main attention was paid to cysteine. The changing concentrations of this amino acid were showing if the antecedents in the addition are used for its production and, therefore, if it is possible to stimulate the production of core protein with these antecedents. The results are discussed in the conclusion of this thesis. The next step should be the detection of the concentration of synthesized aggrecan by the immunological method. Presently this method is very expensive. Therefore, the method of setting the core protein of aggrecan with the help of suitable amino acid was used for the first tests.
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Exploring novel strategies targeting HBV
Šmilauerová, Kristýna ; Grantz Šašková, Klára (advisor) ; Černý, Jan (referee)
An effective and safe vaccine against Hepatitis B virus already exists, yet morbidity and mortality of this illness are still high. The key to developing a reliable treatment is a deep knowledge of the virus' life cycle and functions of all its components. In the presented work we explored an interactome of the Core protein of the Hepatitis B virus. Using proximity-dependent biotin identification technique (BioID) coupled to mass spectrometry we have identified a list of potential candidates that are either significantly enriched (in total 105 proteins) or less abundant in the presence of the HBV Core protein in the cell (40 proteins). The list also includes known HBV Core interacting proteins SRPK1 and SRPK2, and p53 protein whose expression is known to be repressed due to the HBV Core interaction with the E2F1 transcription factor. Many of the newly identified possible HBV Core interacting proteins are involved in biological processes already known or are suspected to be influenced by the HBV such as translational and transporting processes or gene expression and macromolecule production. Overall, this work comprehensively characterizes the interaction landscape of the HBV Core protein in the live cells and might thus serve as a reliable start for in depth HBV-host interaction analysis. Key...
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Novel hepatitis C virus proteins
Zeman, Jakub ; Vopálenský, Václav (advisor) ; Horníková, Lenka (referee)
The hepatitis C virus (HCV) is a major etiological agent of chronic liver diseases. More than 170 million people worldwide are chronically infected, and more than 100 thousand of them develop hepatocellular carcinoma a year. HCV is an enveloped, positive-sense single-stranded RNA virus (+ssRNA virus) of the family Flaviviridae. Its genome is translated to produce a single polyprotein precursor that is further processed by cellular and viral proteases to form 10 viral proteins. Moreover, there is another protein encoded in an alternative reading frame. Two alternative translation mechanisms have been proposed for expression of this alternative reading frame protein (ARFP): a frameshift mechanism and translation initiating from internal start codons. Despite ten years of research its role in vivo is not yet explained. It appears that secondary structures in the core encoding region of HCV genome but not ARFP expression are required for robust viral translation and replication. The results of recent studies suggest that mutations distorting these structures may result not only in slowing down the viral cycle but also in a brand new and utterly unusual serological profile in patients as well as an increased level of expression of ARFP.
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Exploring novel strategies targeting HBV
Šmilauerová, Kristýna ; Grantz Šašková, Klára (advisor) ; Černý, Jan (referee)
An effective and safe vaccine against Hepatitis B virus already exists, yet morbidity and mortality of this illness are still high. The key to developing a reliable treatment is a deep knowledge of the virus' life cycle and functions of all its components. In the presented work we explored an interactome of the Core protein of the Hepatitis B virus. Using proximity-dependent biotin identification technique (BioID) coupled to mass spectrometry we have identified a list of potential candidates that are either significantly enriched (in total 105 proteins) or less abundant in the presence of the HBV Core protein in the cell (40 proteins). The list also includes known HBV Core interacting proteins SRPK1 and SRPK2, and p53 protein whose expression is known to be repressed due to the HBV Core interaction with the E2F1 transcription factor. Many of the newly identified possible HBV Core interacting proteins are involved in biological processes already known or are suspected to be influenced by the HBV such as translational and transporting processes or gene expression and macromolecule production. Overall, this work comprehensively characterizes the interaction landscape of the HBV Core protein in the live cells and might thus serve as a reliable start for in depth HBV-host interaction analysis. Key...
|
|
|
Novel hepatitis C virus proteins
Zeman, Jakub ; Vopálenský, Václav (advisor) ; Horníková, Lenka (referee)
The hepatitis C virus (HCV) is a major etiological agent of chronic liver diseases. More than 170 million people worldwide are chronically infected, and more than 100 thousand of them develop hepatocellular carcinoma a year. HCV is an enveloped, positive-sense single-stranded RNA virus (+ssRNA virus) of the family Flaviviridae. Its genome is translated to produce a single polyprotein precursor that is further processed by cellular and viral proteases to form 10 viral proteins. Moreover, there is another protein encoded in an alternative reading frame. Two alternative translation mechanisms have been proposed for expression of this alternative reading frame protein (ARFP): a frameshift mechanism and translation initiating from internal start codons. Despite ten years of research its role in vivo is not yet explained. It appears that secondary structures in the core encoding region of HCV genome but not ARFP expression are required for robust viral translation and replication. The results of recent studies suggest that mutations distorting these structures may result not only in slowing down the viral cycle but also in a brand new and utterly unusual serological profile in patients as well as an increased level of expression of ARFP.
|
|
|
Elaboration and introduction of the method for determination of some proteins
Hruzík, Ondřej ; Buňka, František (referee) ; RNDr.Karel Gebauer (advisor)
Core protein of aggrecan has a significant share on the correct function of articular cartilage. Its lack or structural failure could be the reason for the disfunction of the cartilage. The culture of chondrocytes taken from a pork articular cartilage was used for the study of aggrecan production. The monolayer culture method offers the model system which has enabled us to watch the aggrecan production into growth medium. The aggrecan synthesis was stimulated in the media with addition of L-methionin, L-serin and sodium selenite pentahydrate. Methionin and serin are antecedents of sulphur amino acid of cysteine, whose role is incredibly important for the correct function of core protein. Growth media and chondrocytes were analysed with the help of the automatic amino acids analyzer unit after acid or oxidative hydrolysis. The analyse established the amino acid representation. The main attention was paid to cysteine. The changing concentrations of this amino acid were showing if the antecedents in the addition are used for its production and, therefore, if it is possible to stimulate the production of core protein with these antecedents. The results are discussed in the conclusion of this thesis. The next step should be the detection of the concentration of synthesized aggrecan by the immunological method. Presently this method is very expensive. Therefore, the method of setting the core protein of aggrecan with the help of suitable amino acid was used for the first tests.
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