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Phylogenomics, genome size evolution and repeat dynamics in the genus Amomum Roxb. (Zingiberaceae)
Hlavatá, Kristýna ; Fér, Tomáš (advisor) ; Haevermans, Thomas (referee) ; Zedek, František (referee)
Amomum Roxb. s.l. (black cardamom) is a complicated genus in the ginger family Zingiberaceae (subfamily Alpinioideae) that according to some definitions includes groups of species recognized as separate genera, e.g. genus Elettariopsis Baker. Phylogenetic studies have so far failed to elucidate both the position of Amomum within Alpinioideae and the relationship between Amomum and other genera like Elettariopsis. In this work, Amomum was subjected to a detailed morphological analysis of the largest possible sampling, together with a phylogenetic analysis. Amomum was recircumscribed, Amomum s.s. and three new genera were established, three genera were resurrected, and genus Elettariopsis was merged into Amomum. Meanwhile, new species were described and others epitypified. A well-resolved nuclear-gene phylogeny of Amomum s.s. was obtained using next-generation sequencing (Hyb-Seq) and showed the existence of four clades (A, B, C, D) within the genus. Clade D, the former genus Elettariopsis, was further divided into three subclades (D1-D3). A chloroplast DNA-based phylogeny supported this structure, but additional phylogenies based on ribosomal DNA were incongruent with it, indicating that the frequently used ITS marker and other rDNA markers may not be suitable for reconstructing deeper phylogenetic...
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Long-distance migrations of hover flies (Diptera: Syrphidae)
Hlaváček, Antonín ; Hadrava, Jiří (advisor) ; Černý, Martin (referee)
Long-distance migration of insects is well-known phenomenon, studied especially in butterflies and locusts. Until now, the migration of hover flies (Diptera: Syrphidae) was considered a rather marginal issue and not much attention has been given to it. However, billions of hoverflies take part in the spring and autumn migration every year, transferring hundreds of tonnes of biomass and nutrients. The aim of this thesis is to review an existing knowledge on the migration of hoverflies in context of their ecology and evolution. In the first part, I discuss the biogeography and diversity of migratory hover flies, methods for studying migration and the application of such methods in hover flies migration. In the following chapters, I focus on the migration of particular species in context of their ecology and evolution, especially on population dynamics, phenology, orientation, and dimorphism in the migratory generation.
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World travellers: phylogeny and biogeography of the butterfly genus Leptotes (Lepidoptera: Lycaenidae)
PAPP MAREŠOVÁ, Jana
In this thesis, we investigated phylogenetic and biogeographical relationships of neglected butterflies of the subtribe Leptotina (Lepidoptera: Lycaenidae), widely distributed in tropical and subtropical areas around the world. We used both mitochondrial and nuclear markers and different molecular analyses to resolve relationships within the subtribe. We also focused on diversification times and biogeographical patterns of Old World taxa and detailed phylogeography of the most widespread species, Leptotes pirithous.
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Integrovaná výuka vzdělávacích oborů zeměpis a přírodopis na 2. stupni ZŠ (s praktickou ukázkou výuky tematického obsahu biogeografie)
HŘAVOVÁ, Michaela
This diploma thesis deals with integrated teaching, its application both in our country and abroad and with its possible uses when teaching Geography and Natural History. The aim of the thesis was to create teaching activities connecting those two subjects with biogeographical content. Three teaching activities focusing on distribution of organisms in the area of Africa, Australia and Oceania and America had been created in total. Two of the activities had been designed to incorporate another subjects, namely Art and Czech Language. A conception of teaching of biomes and biogeography and a suggested arrangement of educational content in Geography and Natural History at second stages of elementary schools are also included in the thesis.
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Trends in tree-ring width of treeline trees along latitudinal gradient from subtropics to the Arctic.
Zborníková, Kateřina ; Treml, Václav (advisor) ; Mašek, Jiří (referee)
This bachelor thesis is interested in a tree ring of trees at the treeline from subtropics to the arctic and the main aim of this work is to find if there is a trend in the tree ring width at the treeline along the latidunial gradient. The work/thesis focuses on conifers. The data were obtained from International Tree-Ring Data Bank database, article searches and from the internal workplace database. A total of 9859 annual ring samples were obtained from 153 localities in Europe. Trees of the genus Pine (Pinus), Spruce (Picea) and Fir (Abies) were selected, which dominate the europeans ecotones of treeline. After removing the age trend, the regression of tree ring width and the latitude, were calculated. The results showed that in most cases the tree ring width decreases with higher latitude. However, a small number of tree ring samples from latitudes around 55ř north latitude adds to the uncertainty of this claim.
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Ecology of yeasts in forest soils
Mašínová, Tereza ; Baldrian, Petr (advisor) ; Marečková, Markéta (referee) ; Kolařík, Miroslav (referee)
Microbial communities inhabiting upper soil horizons represent an important component of forest ecosystems. However, despite the evidence that yeasts represent an integral part of topsoil fungal communities, their role in forest ecosystems received so far little attention. The aims of my PhD thesis were to describe yeast communities in soil and litter of a temperate forest using high- throughput sequencing of environmental DNA, identify dominant yeast species and to explore how the composition of yeast communities reflects the biotic and abiotic factors of the environment. I also aimed to isolate yeasts from forest topsoil, describe novel yeast taxa abundant according to the environmental DNA survey and screen representative isolates for the traits relevant to their involvement in organic matter transformation. I have demonstrated that in forest topsoil, yeasts represent a substantial proportion of fungal communities with higher relative abundance in soil than in litter. In litter, yeast communities differ significantly among beech, oak and spruce-dominated stands. Drivers of community assembly are probably more complex in soils and comprise the effects of soil chemistry and vegetation. Even though there are similarities in the response of the communities of yeasts and filamentous fungi to...
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Genetic variability of the genus Alburnoides in Azerbaijan
Omelchenko, Dmytro ; Švátora, Miroslav (advisor) ; Vukićová, Jasna (referee)
The Caucasus region is characterized by high rate of endemism and taxa richness of fishes. Azerbaijan is a country situated on the border between Europe and Asia with rivers flowing in the Caspian Sea. Natural environment of this country is represented by various habitats with diverse ichthyofauna. This region is very attractive for biogeographical studies because it lays on the border of two different ecoregions. Even on the modern stage of scientific cognition, there is still lack of data about freshwater fishes from that region. Spirlins or rifle-minnows (Alburnoides Jeitteles, 1861, Actinopterygii, Cyprinidae) is a genus of small freshwater fishes and it has been chosen as a focus of this thesis because of numerous reports of new species from surrounding countries. The presented thesis is one of the seldom molecular studies trying to reveal the taxonomical situation within the genus Alburnoides, describe the phylogenetic relationships between geographically isolated populations, and provide biogeographical implications for fishes in the Caspian Sea river basins. Both mitochondrial (cytochrome b, cytochrome oxidase subunit I) and nuclear (RAG1, rhodopsin) markers were used in the study and the Maximum Likelihood, Maximum Parsimony and Bayesian phylogenetic analyses were performed. Further, the...
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Diversity and distribution of scorpions (Arahnida: Scorpiones)
Plíšková, Jana ; Šťáhlavský, František (advisor) ; Kůrka, Antonín (referee)
This thesis is devoted to species diversity and biogeography of Scorpiones order. Bachelor work is presenting basic problems of this area and major split in higher classification of scorpions, which is still not firmly defined. In the work is also provided an overview of the current 15 families, to whom is the scorpions order divided by classification proposed by Soleglad & Fet (2003), including their distribution, the number of families and species they cover. Factors which had or still have an impact on the expansion of scorpions are also discussed. Described factors, which affects the distribution and diversity of scorpions, are: continental drift and Quaternary climate change (historical aspects) and temperature, parthenogenesis and human factor (environmental aspects). These factors influenced the biogeography of scorpions at different taxonomic levels, in different evolution time scale and on differently sized territories.
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Molecular variability and distribution of the Frustulia rhomboides species complex (Bacillariophyceae)
Urbánková, Pavla ; Kulichová, Jana (advisor) ; Bešta, Tomáš (referee)
Recent use of molecular methods to revisit taxonomically problematic diatom species revealed severe limitations of morphological species concept. Characterization of diatom species which was based solely on the morphology of their frustules often generated too broad species boundaries which inevitably lead to wrong conclusions about their ecology and distribution. Widespread opinion that many diatom species are cosmopolitan generalists resulted in a theory that dispersal of diatoms is not limited by geographical distance. However, a number of recent studies showed that dispersal of diatoms is governed by the same rules which matter for macroorganisms. Proposed master thesis addresses the topic of diversity and dispersal in diatom species complex Frustulia rhomboides sensu lato in Europe and New Zealand. Results suggest that: (1) although revealed molecular variability in this complex shows clear ecological and biogeographical signal, it is not correlated in morphology. This is another support to general need for adoption of different species concept in diatoms. (2) A considerably uneven ratio in species diversity of genus Frustulia found in ecological similar habitats in Europe and New Zealand supports the idea that diatom dispersal is limited and stressed the need for studies dealing with biogeography.
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