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Design and optimization of piezoactuators
Jajtner, Jan ; Pavera, Michal (referee) ; Nováček, Zdeněk (advisor)
This bachelor’s thesis main concern is to develop and optimize a linear impact-drive piezoelectric actuator for scanning tunneling microscope working as vertical macroscopic manipulator of the conducting tip. UHV piezoelectric actuator issues are being discussed and analyzed on theoretical level in order to create adequate mathematical model. Based on expressed requirements a prototype is designed and measured, while seeking appropriate parameters of supply pulse and loading.
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Corrosion of biodegradable magnesium alloys in Hank's solutions
Faltejsek, Petr ; Fintová, Stanislava (referee) ; Doležal, Pavel (advisor)
The aim of the thesis was to design a methodology for in-situ evaluation of degradation of selected magnesium alloys using AFM in SBF solutions. Study of the degradation of magnesium alloys in a chemically different corrosive environments of simulated body fluid (SBF - Hank's solution). For the pilot study were used magnesium alloys AZ31 and AZ61, manufactured by advanced method of squeeze casting. Part of the thesis was to evaluate the influence of the chemical composition and structure on the degradation properties of these alloys.
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Mutant p53 protein and its binding and transactivation properties
Vojsovič, Matúš ; Němcová, Andrea (referee) ; Brázda, Václav (advisor)
The "genome guardian" protein p53 plays an important role in cancer growth. P53 mutations occur in more than 50 % of human cancers. Mutated proteins significantly affect the proper functioning of cells. Due to the mutation, proteins can gain, but also lose, some of their functions, which also help them in modulating cell metabolism. Mutant forms of p53 may be involved in indirect binding or direct binding to DNA. They appeared to have a lower binding activity to the DNA than non-mutated p53. The experimental part of the thesis focuses on measuring the binding properties of selected p53 mutants using gel retardation analysis and using an atomic force microscope and monitoring the transactivation potential. The results were compared with the wild-type form of p53. It has been found that binding to the most common types of local DNA structures reduces the binding activity of p53 mutants over the wild-type. P53 mutants has been shown to have a lower intensity of transactivation than the wild-type p53 by studying their transactivation abilities and also they are able to reduce the intensity of transactivation when co-expressed with p53.
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Optical Measurement of Electromechanical Characteristics of Heart Cells
Čmiel, Vratislav ; Križanová,, Olga (referee) ; Babula, Petr (referee) ; Provazník, Ivo (advisor)
Dissertation is focused on the application of optical measurement methods using techniques of optical microscopy and fluorescence microscopy in measurements of electromechanical characteristics of isolated cardiac cells and clusters of differentiated cardiomyocytes. The first proposed method uses a practical combination of fluorescence microscopy equipped with fluorescent fast and high-resolution camera and atomic force microscopy for simultaneous measurement of calcium transients and contraction of cardiomyocyte clusters. The signals obtained undergoes filtration, processing and analysis. Result function parameters obtained by analyzing signals after application of caffeine are evaluated by comparison with functional parameters obtained during the control measurement. The second proposed method is applied to the cardiomyocyte clusters for the purpose of cardiomyocyte contraction signals measurement. The signals obtained by optical methods are analyzed and compared with the reference signal obtained using atomic force microscopy. Optical measurement method of cell contractins based on detection of cell ends using adjusting of microscopy images by re-sharpening and fluorescence method for cardiomyocyte contractions measurements were designed to increase realiability in simultaneous measurement of cell contractions simultaneously with calcium transients in isolated cardiomyocytes experiments.
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Epitaxial growth of cobalt islands via oxide mediated epitaxy
Stará, Veronika ; Kolíbal, Miroslav (referee) ; Čechal, Jan (advisor)
This bachelor thesis deals with preparation, growth and analysis of cobalt thin films. The films are formed on silicon (111) samples covered with a thin layer of native oxide SiO2. Cobalt thin films were prepared using oxide mediated epitaxy method with the effusion cell as a source of cobalt atoms. Composition and morphology of the resulting Co system was studied as a function of the annealing temperature. Another goal of this research was to determine the dependence of the final island shape on the amount of deposited material and substrate orientation. The prepared structures were analyzed using X-ray photoelectron spectroscopy, atomic force microscopy and scanning electron microscopy. To determine the thickness of subsurface islands the samples were etched in buffered hydrofluoric acid and analyzed using above mentioned methods.
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Mechanical excitation of self sensing SPM probes
Novotný, Ondřej ; Piastek, Jakub (referee) ; Pavera, Michal (advisor)
This bachelor thesis deals with the development of the SPM microscope probe holder which is designed for mechanical excitation of the probes. The first part of the thesis focuses on the description of physical theory, such as the principle of atomic force microscopy, the function of piezoceramics and the description of used quartz tunning fork based probes. The second part describes the gradual development and design of the new probe holder. Testing of the designed probe holder and comparison of mechanical and electric excitation is depicted at the end of this work. The designed probe holder was manufactured, the assembly procedure was described, and the drawings of the individual parts were created.
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Development of Atomic- and Ion Beam Sources
Šamořil, Tomáš ; Lencová, Bohumila (referee) ; Mach, Jindřich (advisor)
The objective of this master thesis was to provide the optimization of an ion-atom beam source for the improvement of its properties. The improvement of the parameters increases the efficiency of the source during the deposition of gallium nitride ultrathin films (GaN) being important in microeletronics and optoelectronics. After optimization, the depositions of GaN ultrathin films on Si(111) 7x7 at lower temperatures (
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Computational modelling of mechanical tests of animal cell
Orlová, Lucie ; Fuis, Vladimír (referee) ; Burša, Jiří (advisor)
Předkládaná diplomová práce se zabývá stavbou živých živočišných buněk a jejich odezvou na mechanické zatěžování. Zobecněným zaměřením práce je popis mechanického chování buňky nejenom ve fyziologickém, ale i v patologickém stavu. Výchozím předpokladem pro úspěšné řešení zadané úlohy je vysoce interdisciplinární přístup kombinující výpočtové přístupy mechaniky těles (v~tomto případě metodu konečných prvků) s lékařským výzkumem. Nejdůležitějším bodem při tvorbě výpočtového modelu, pomocí něhož je možné aproximovat chování živé buňky při zatížení, je zejména identifikace mechanicky významných komponent a~jejich materiálových parametrů. V tomto případě jsou jako mechanicky význačné identifikovány spojité součásti jádro, membrána a cytoplazma, které jsou nově propojeny s prvky diskrétními (mitochondriální sítí) v hybridním modelu, jehož platnost je ověřena pomocí experimentálních dat. Tento model slouží jako podklad k vyhodnocení míry vlivu mitochondrií na celkovou tuhost buňky.
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