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Comicellization of polystyrene-block-poly(acrylic acid) with low-molar-mass surfactants
Paloncýová, Markéta ; Štěpánek, Miroslav (advisor) ; Matějíček, Pavel (referee)
This B.Sc. thesis deals with the study of the effect of low-molar-mass ionic surfactants sodium dodecyl sulfate (SDS) and hexydecyltrimethylammonium bromide (HTAB) on association behavior of the block copolymer polystyrene-b-polyacrylic acid (PS-b-PAA) in alkaline aqueous solutions. Prepared polymeric nanoparticles were characterized by static and dynamic light scattering, transmission electron microscopy and 1 H NMR spectroscopy. It was found that both surfactants interact only with PAA blocks and their presence in the system leads to worsening of the copolymer solubility which manifests itself in the formation of large micellar aggregates and in precipitation of the copolymer-surfactant complexes.
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Electron cryo-microscopy techniques in biological research and nanotechnologies
Mistríková, Veronika ; Bednár, Jan (advisor) ; Nebesářová, Jana (referee) ; Benada, Oldřich (referee)
Preparation of biological samples for transmission electron microscopy is not a trivial task. The samples must withstand a vacuum environment present inside a microscope, and it is often necessary to use non-physiological procedures for their processing. These procedures usually involve aldehyde-based fixation, replacing water with alcohol (i.e. dehydration/substitution), and embedding into a resin, which creates support for the subsequent preparation of thin sections that can be placed into the microscope. In the last decade, the method of cryo-fixation (vitrification) using ultra-fast high-pressure freezing followed by freeze substitution and low-temperature resin embedding gained a dominant position in the cell biology research. In this way, a range of biological samples with a thicknesses up to several hundreds of micrometers was successfully vitrified to a state that was closely related to their in vivo structures. The cryo-fixation of isolated biological objects (with a limited thickness up to several micrometers) is possible in a thin layer of vitrified water by plunge freezing at ambient pressure. In combination with electron cryo-microscopy, this method has become the most effective and fundamental principle for the high-resolution studies and image analysis of fully hydrated samples...
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Detection and measurement of electron beam in TEM images
Polcer, Simon ; Vičar, Tomáš (referee) ; Chmelík, Jiří (advisor)
This diploma thesis deals with automatic detection and measurement of the electron beam in the images from a transmission electron microscope (TEM). The introduction provides a description of the construction and the main parts of the electron microscope. In the theoretical part, there are summarized modes of illumination from the fluorescent screen. Machine learning, specifically convolution neural network U-Net is used for automatic detection of the electron beam in the image. The measurement of the beam is based on ellipse approximation, which defines the size and dimension of the beam. Neural network learning requires an extensive database of images. For this purpose, the own augmentation approach is proposed, which applies a specific combination of geometric transformations for each mode of illumination. In the conclusion of this thesis, the results are evaluated and summarized. This proposed algorithm achieves 0.815 of the DICE coefficient, which describes an overlap between two sets. The thesis was designed in Python programming language.
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Techniques using beam of charged particles for imaging and material analysis
Lamborová, Leona ; Kičmerová, Dina (referee) ; Čupera, Jan (advisor)
This bachelor´s thesis deals with techniques using beam of charged particles for imaging and material analysis. There are two types of charged particles that are used for this purpose, electrons and ions. This research study is divided into principles of electron optics and principles of ion optics. Further, there is mentioned function, construction and detectors used for imaging and chemical analysis of scanning electron microscopy, transmission electron microscopy and focused ion beam.
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Microscopy: tool for material analysis
Pleskalová, Kateřina ; Řehořek, Lukáš (referee) ; Čupera, Jan (advisor)
This thesis deals with description of the microscopic techniques that are used to analyse materials. The introductory part briefly summarizes the history of microscopy. The first part of the thesis is focused on light microscopy and the confocal microscopy technique is more elaborated here. The second part of the thesis is focused on basic techniques of electron microscopy, which means transmission electron microscopy and scanning electron microscopy. At the end of each chapter, there is summarization of limits and advantages of these techniques. The preparation of metallographic samples is also briefly described for these microscopic techniques.
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Characterization of PHA producing microbial cells by advanced microscopic and cytometric techniques
Dlouhá, Karolína ; Nováčková, Ivana (referee) ; Obruča, Stanislav (advisor)
The aim of this bachelor thesis is to document production of polyhydroxyalkanoates in selected bacterial strains, which were Pseudomonas thermotolerans, Chelatococcus daeguensis, Tepidiphilus thermophilus and Chelatococcus thermostellatus. In the case of the microorganisms Tepidiphilus thermophilus and Pseudomonas thermotolerans, the production of PHA´s has not yet been described, and in the Chelatococcus bacteria, which were analysed in this work, the production has not yet been documented by electron microscopy. In this work, the selected producers were analysed by flow cytometry first, using BODIPY and Nile Red as fluorescence probes. Selected producers, for which was production confirmed, were analysed by other methods, such as fluorescence microscopy, cryo scanning electron microscopy and transmission electron microscopy. In the bacterial culture of Pseudomonas thermotolerans, PHA´s production wasn´t confirmed by the first analysis by flow cytometer. For other microorganisms was production confirmed. Chelatococcus bacteria clearly proved to be better producers. Bacterial cells of Tepidiphilus thermophilus produced smaller granules and in lower amount.
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Detection of biological structures in TEM microscope images
Cikánek, Martin ; Chmelík, Jiří (referee) ; Potočňák, Tomáš (advisor)
The aim of the first part of this thesis is to explain the theoretical basis of transmission electron microscopy and to mention fundamental parts of transmission electron microscopes. The next part of this work is focused on possible methods of image segmentation, the use of neural networks in the detection of objects in an image and the subsequent clustering of results. The theoretical part of the thesis is concluded with an explanation of some already published methods of automatic detection of biological structures in microscopic images and theoretical design of the algorithm, which will be subsequently developed. The process of training neural networks in order to automatically detect biological structures in an image is described at the beginning of the practical part. This is followed by an evaluation of the results achieved by these networks. Subsequently, cluster analysis methods are applied to these results, the products of which are compared with each other and also with the results obtained by already published methods.
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Transmission Electron Microscopy of Al-Mg Aluminium Alloys with Addition of Sc and Zr
Křivská, Barbora ; Šlapáková, Michaela (advisor) ; Málek, Přemysl (referee)
Abstract. The microstructure and its evolution during isochronal annealing of a twin roll cast Al-3.2Mg-0.19Sc-0.14Zr (wt.%) alloy was investigated by light optical microscopy and electron microscopy. Two procedures - equal channel an- gular pressing and annealing at 300 řC for 8 h were applied to enhance mechanical properties of the alloy. The annealing led to the precipitation of a fine dispersion of Al3(Sc,Zr) particles providing an increase of ∼20 HV in the Vickers microhard- ness. Equal channel angular pressing refined significantly the microstructure and raised the microhardness by about 30 HV. Applying of the 300 řC / 8 h both before and after equal channel angular pressing did not induce further strength- ening. However, the precipitation of the Al3(Sc,Zr) phase had a stabilizing effect when the material was exposed to the subsequent isochronal annealing. 1
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Vliv adipokinetického hormonu na působení jedu z vosičky, \kur{Habrobracon hebetor}, ve svalové tkáni octomilky, \kur{Drosophila melanogaster}
PODLAHOVÁ, Šárka
Adipokinetic hormone (AKH) delays or reduces neuromuscular paralysis caused by the venom of the parasitic wasp Habrobracon hebetor, however the associated mechanism is not known yet. This thesis describes in detail the technique of preparation of semithin and ultrathin sections analyzed by a transmission electron microscopy that enabled detailed observation of changes in muscular ultrastructure of the Drosophila melanogaster thorax after the wasp venom and AKH treatments. The results revealed that the wasp venom induced significant changes in the ultrastructure of myofibrils and mitochondria; however, the changes were reduced after co-application with AKH. AKH itself did not affect organization of muscle fibres but elicited vacuolization in mitochondria. Furthermore the wasp venom treatment led to significant prolongation of sarcomeres.
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Using blind image filtering for images from TEM microscopes
Nováková, Kateřina ; Mézl, Martin (referee) ; Potočňák, Tomáš (advisor)
Předložená práce se zabývá problematikou slepé filtrace obrazů z transmisního elektronového mikroskopu. V úvodu práce je uveden popis transmisního elektronového mikroskopu. Navazující část popisuje mechanismy interakce elektronů se zkoumaným vzorkem a z toho vyplývající zobrazovací techniky elektronové mikroskopie. Poslední kapitola teoretické části práce zahrnuje popis vybraných metod slepé filtrace obrazu zejména s využitím dekompozice obrazu na charakteristické složky. Taktéž je zde uveden výčet metod pro zhodnocení úspěšnosti filtrace. V praktické části jsou popsány aplikované metody slepé filtrace obrazů a výsledky filtrování. Jednotlivé metody jsou mezi sebou porovnány. Získané výsledky a využitelnost aplikovaných metod jsou zhodnoceny v diskuzi.
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