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Application for Alignment of DNA Parts
Kašpárek, Tomáš ; Žák, Jakub (referee) ; Rozman, Jaroslav (advisor)
This thesis deals with DNA sequences alignment methods with focus on execution speed of given task and its optimality. The outcome of this thesis results in multiple programs, which presents DNA alignment algorithms and their versions programmed with OpenCL libraries, which are optimized on calculation rate. Text of this thesis apprises reader with DNA alignment problematic and its importance in biology. Further, algorithms for DNA alignment and options of their speed-up using libraries like CUDA or OpenCL are presented.
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Brno, Cycling route around the river Svratka - study
Fischer, Michal ; Wendrinski, Jacek (referee) ; Radimský, Michal (advisor)
The bachelor thesis deals with the design of a cycle path and paths for skaters and pedestrians along the river Svratka. Only pedestrian traffic is currently in the vicinity. In this work a new solution is developed, which is divided into three sections. The design of the first and third stretches foresees the construction of two new cycle paths and the second section copies the existing communications.
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Automatic rotational alignment of head CT scans
Karmazinová, Inna ; Kolář, Radim (referee) ; Jakubíček, Roman (advisor)
The aim of this thesis is automatic alignment of head CT scan. Currently, the alignment is performed manually by an expert, however this process is time consuming. Therefore, methods for automatization of this process are being developed. Two algorithms for alignment in axial and coronal plane were designed based on bilateral symmetry of head. Following an algorithm for alignment in sagittal plane which uses CG-TOB reference line for rotation angle detection. Algorithms were implemented in MATLAB and tested and validated using a database of manually annotated head CT scans.
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Genomic Data Mining Techniques
Jaša, Petr ; Křivka, Zbyněk (referee) ; Burgetová, Ivana (advisor)
First of all, this thesis sets itself a goal to introduce some common technics for datamining in genomics and as a next step to implement own algorithm like algorithm BLAST. In the concrete, this work is pointed to sequences of DNA. The DNA sequence contains in itself genetic information, which is template for living organism. For explanation this information can be used number of technics. This paper describes algorithm Fasta and algorithms from BLAST family. With these algorithms, it is possible to gain a lot of important information even about such DNA sequences, where only primary structure is known. Principle of these algorithms is based on alignments of one query sequence, which we want to obtain some information from, with many sequences stored in database. According to result alignment, it is possible to determine many features of the query sequence.
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Vertical Displacement Measurements at JAMU dorm in Brno
Dörrer, Tomáš ; Rinda, Jiří (referee) ; Vitula, Alexej (advisor)
The subject of the diploma thesis is a height measurement done within several time periods, in order to detect vertical displacements of an object of dormitories of JAMU on Novobranska street in Brno. The thesis includes selection of the method and its accuracy verification and also processing of the measurements and suitable interpretation of achieved results.
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Analysis of Indicator Changes at the Adast Systems, a.s. Company Using Time Series
Všianský, Martin ; Trunečková, Dana (referee) ; Kropáč, Jiří (advisor)
This bachelor´s thesis analyzes economic indicators in Adast Systems Inc. using time series. Purpose of the thesis is to aplicate statistical methods for use in evaluating economic indicators in mentioned company during last ten years. Thesis is composed of two parts. In theoretical part we circumscribe basic concepts and formulas necessary to calculate regression functions of time series. In practical part we apply theoretical data to concrete data taken from annual company statements. Using time series analysis we are also able to predict future development of company´s economic indicators, which will serve us in adducing our own evaluation of company and in proposing of changes in corporate strategy. Utilisation of this prediction may be useful for corporate strategy.
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