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Biotransformation of nitro aromates
Tomeček, Jaromír ; Bednařík, Karel (referee) ; Friedl, Zdeněk (advisor)
Contamination by nitroaromatic compounds, such as explosives, pesticides or other nitroaromatic compounds, is worldwide environmental problem. This text focuses on contamination by compounds from military and ammunition industry, most especially 2,4,6-trinitrotoluene (TNT), 1,3,5-trinitro-1,3,5-triazinane (RDX) and 1,3,5,7-tetranitro-1,3,5,7-tetrazocane (HMX). First goal of this work is to provide the reader with a aerobic biodegradation and transformation processes of nitroaromatic compounds named above. The second goal is to compare the toxicity of initial nitroaromates and their transformation intermediates.
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Biotransformation of ferulic acid to sensory active compounds
Opial, Tomáš ; Pernicová, Iva (referee) ; Obruča, Stanislav (advisor)
The bachelor thesis deals with the biotransformation of ferulic acid to sensory active substances. The experiment was based on monitoring the biotransformation potential of selected microorganisms by high performance liquid chromatography (HPLC) method while the cultivation was performed in two parallel runs and samples with added ferulic acid were divided into 24-hour effect and 48-hour effect of ferulic acid on bacterial cultures. Thermophilic bacteria and halophilic bacterium Halomonas neptunia have been found to be the most suitable candidates for the biotransformation of ferulic acid to sensory active substances. In both samples of Schlegelella thermodepolymerans (DSM 15344 and DSM 15264) was formed 33 mg/l and 76 mg/l of vanillic acid and 81 mg/l and 71 mg/l of 4-vinylguaiacol after 24 hours of ferulic acid effect. In a sample with T. taiwanensis was formed 61 mg/l of vanillic acid and 32 mg/l of 4-vinylguaiacol after 48 hours of ferulic acid effect, and in a sample of R. xylanophilus was formed 56 mg/l of 4-vinylguaiacol. In the sample with H. neptunia after 24 hours of ferulic acid effect was formed 296 mg/l of vanillic acid, which was up to 59% of the conversion of the added ferulic acid and in a sample with H. organivorans after 24 hours of ferulic acid effect was formed 71 mg/l of vanillic acid. However, after 48 hours of ferulic acid effect, vanillic acid degraded. In addition to screening of biotransformation potential, the sequence of bacterial enzymes, involved in biotransformation, was also compared with protein sequences in the database using the BLAST search tool. The presence of genes encoding enzymes involved in biotransformation has been demonstrated for almost all used microorganisms except H. neptunia, for which no gene has been identified. The highest number of genes present in bacteria was with the enzymes feruloyl-CoA synthetase, enoyl-CoA hydratase/isomerase, acetoacetyl-CoA thiolase and vanillin dehydrogenase.
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Asymmetric biotransformation of certain tetralones to tetralols
Andrejch, Jan ; Poljaková, Jitka (advisor) ; Martínek, Václav (referee)
Preparation of pure enantiomers is very important part of chemical synthesis of industrially and pharmaceutically useful compounds. In recent years traditional chemical synthesis is replaced by biotransformations. Biotransformation means the use of isolated enzymes, enzymatic systems or whole cells in catalysis of chemical reactions. In comparison with chemical synthesis it has certain advantages. In this work the activity of yeast strains Saccharomyces uvarum K8, Saccharomyces cerevisiae K12, Torulopsis azyma K43, Torulopsis sphaerica K46 and Candida tropicalis K49, K51 a K52 in catalysis of reduction 6- bromo-2-tetralone, 7-hydroxy-2-tetralone and 7-methoxy-2-tetralone was studied. Products of these reductions are used in preparation of pharmaceutical drugs. Suitable conditions for biotransformations were found and it was proved that the yeast strains Saccharomyces uvarum K8 and Candida tropicalis K52 are able to produce 2- tetralones with ee greater than 90% with conversion 100% after four-hour biotransformation. This thesis is written in Czech.
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Biotransformation of phenolic compounds by bacterium Schlegelella thermodepolymerans
Opial, Tomáš ; Dvořák,, Pavel (referee) ; Obruča, Stanislav (advisor)
The diploma thesis deals with the optimization of the biotransformation of ferulic acid into sensory active substances and production of P3HB by bacterium Schlegelella thermodepolymerans. Cultivation experiments were performed in a medium with various concentrations of ferulic acid. Four bacterial strains were used for these experiments. Attention was paid to the model strain DSM 15344, in which a bioinformatic analysis of genes encoding enzymes, that catalyzed the biotransformation reactions of ferulic acid was also performed. Ferulic acid metabolites, specifically sensory active substances such as vanillyl alcohol, vanillic acid, vanillin and 4-vinylguaiacol, were measured by HPLC. S. thermodepolymerans DSM 15344 exhibited a very fast utilization of ferulic acid already within 8 hours of cultivation. The highest yields of ferulic acid metabolites were detected between 8 and 24 hours depending on the initial concentration of ferulic acid. The main metabolites of ferulic acid were vanillic acid and vanillyl alcohol. Vanillic acid reached the highest concentration in 16 hours in the presence of ferulic acid at initial concentration of 0.5 g/l. The highest yield of vanillyl alcohol occurred in 8 hours with ferulic acid at initial concentration of 0.75 g/l. In addition to biotransformation to ferulic acid, the amount of produced P3HB was also measured by GC-FID. Schlegelella thermodepolymerans DSM 15344 produced the highest amount of P3HB at 72 h at the lowest initial concentration of ferulic acid (0.25 g/l). Within the bioinformatic analysis, the presence of one fcs gene was confirmed using the available databases and the BLAST tool, but this was not enough to construct the complete metabolic pathway of ferulic acid by the bacterium S. thermodepolymerans DSM 15344.
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Technologické možnosti využití pivovarských kvasinek
Bergová, Sabina
This Bachelor thesis is focused on technological options on how to utilize brewer's yeast. It describes and concerns primary and secondary yeast cell and the usage of brewer's yeast. The primarily usage of brewer's yeast includes the production of beer, alcohol and last but not least bread. The usefulness of secondary yeast is focused on creation of SCP (Single cell protein), furthermore on how to gain medication and food supplements, cosmetics, feed, ephedrine, biofuel, fertilizer, condiment but also the ability of yeast bio sorption.
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Metabolismus kofeinu v lidském organismu, stanovení vybraných metabolitů metodou HPLC
LÁVIČKOVÁ, Kateřina
This bachelor thesis deals with description of caffeine metabolism in human body and the development, optimization and validation of the analytical method for the determination of selected caffeine metabolites in urine using HPLC. The first part was devoted to the description of caffeine metabolism, sources of caffeine and its influence on human body. Experimental part was focused on the development, optimization and validation of the analytical method to determine four caffeine metabolites and caffeine itself. This method was designed to be used by grammar student's laboratory. The work includes laboratory manual.
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Effect of rat enzymes on the metabolism of tyrosine kinase inhibitors in vitro and in vivo
Škriabová, Simona ; Indra, Radek (advisor) ; Ptáčková, Renata (referee)
Tyrosine kinase inhibitors are small molecules, orally available, well-tolerated and globally approved drugs for the treatment of several types of tumors. These drugs include vandetanib, cabozantinib, and lenvatinib, which are used to treat thyroid cancer. Vandetanib and cabozantinib are drugs approved for the treatment of medullary thyroid cancer, and lenvatinib is approved for the treatment of differentiated thyroid cancer. In the presented diploma thesis, the in vitro and in vivo metabolism of vandetanib, cabozantinib and lenvatinib was studied. Microsomes isolated from the liver of rats premedicated with pregnenolone carbonitrile were used to study in vitro metabolism. Plasma and urine samples of rats premedicated with individual tyrosine kinase inhibitors were used to study in vivo metabolism. The resulting metabolites were analyzed by high-performance liquid chromatography and subsequently identified using the mass spectrometry method. In the study of in vitro metabolism, when NADPH and cofactors (glucuronic acid and glutathione) were added to the samples, it was found that the most metabolites appeared for all three drugs during a longer incubation periods, and at the same time, it was found that glucuronic acid and glutathione can influence the structure, properties and functions of the...
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The influence of xenobiotic metabolizing enzymes and transporters on the incidence of colorectal cancer and chemotherapy outcome
Krus, Ivona ; Souček, Pavel (advisor) ; Králíčková, Milena (referee) ; Hodis, Jiří (referee)
Introduction: Colorectal cancer (CRC) is one of the most frequent malignancies and affects approximately 5% of worldwide population. More than 75% of CRC cases represent sporadic forms. Susceptibility to nonhereditary CRC is significantly influenced by polymorphisms and mutations in low-penetrance genes. Variations in biotransformation and DNA repair genes may result in acumulation of toxins and DNA damage in cells leading to the development of cancer. Furthermore, different gene expression profiles of membrane transporters affecting the accumulation of anticancer drugs in tumour cells, e.g. ABC drug transporters, may largely influence inter-individual variability in drug response and chemotherapy outcome. The aim of this study was to evaluate the role of genetic and lifestyle factors in the risk of onset and progression of colorectal cancer. This study followed selected genetic alterations in xenobiotic-metabolizing enzymes (CYP1B1, GSTM1, GSTT1, GSTP1, NQO1 and EPHX1) and genes involved in response to DNA damage (CHEK2 and NBN), as potential CRC susceptibility factors. Another aim of this study was to investigate expression profile of all human ABC transporter genes to follow their prognostic and predictive potential in colorectal carcinoma. Materials and methods: The polymorphisms and other...
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