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The impact of covid-19 restrictions on carbonaceous aerosols at rural background site: importance of vertical distribution
Mbengue, Saliou ; Vodička, Petr ; Komínková, Kateřina ; Schwarz, Jaroslav ; Zíková, Naděžda ; Prokeš, Roman ; Suchánková, Lenka ; Julaha, Kajal ; Ondráček, Jakub ; Holoubek, Ivan ; Ždímal, Vladimír
In this study, EC and OC at 4 m elevation and EC at 230 m elevation showed a similar \nseasonal pattern with higher values in winter and lower values in summer. OC, measured \nat 230 m height showed an opposite behavior with slightly higher values in spring and \nsummer, probably related to the increased contribution of secondary organic carbon \n(SOC). Concentrations were generally higher at 4 m, where there was also a better \ncorrelation between EC and OC, suggesting a greater influence of local sources near the \nsurface.
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NMR Aerosolomics Study of Water-Soluble Organic Compounds in Size-Resolved Particulate Matter
Horník, Štěpán ; Vodička, Petr ; Pokorná, Petra ; Schwarz, Jaroslav ; Ždímal, Vladimír ; Sýkora, Jan
Organic aerosols (OA) account for a significant fraction (10 – 90%) of atmospheric particulate matter (Hallquist et al., 2009). The composition of organic aerosols is very complex and is usually characterized by their water solubility. Water-soluble organic compounds (WSOC) constitute a large fraction of OA (10 – 80%) and consist of chemical species containing oxygenated functional groups such as hydroxyl, carboxyl, or carbonyl groups. NMR spectroscopy represents an alternative to commonly used techniques (gas chromatography-mass spectrometry, liquid chromatography-based techniques) for WSOC analysis. Our recently introduced method, called NMR aerosolomics, allows quantitative analysis of dozens of individual compounds from different aerosol samples. An important part of the characterization of aerosols is their classification by particle size. The analysis of individual compounds in the size-resolved fractions of the WSOC class has been performed only in a few studies that focus mainly on a particular subclass of compounds or use multiple analytical techniques.
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Physicochemical Properties and Origin of PM1 Measured at a Rural Background Site
Pokorná, Petra ; Zíková, Naděžda ; Vodička, Petr ; Lhotka, Radek ; Mbengue, Saliou ; Holubová Šmejkalová, A. ; Riffault, V. ; Ondráček, Jakub ; Schwarz, Jaroslav ; Ždímal, Vladimír
This study assesses the variability of organic aerosol (OA) sources monitored at the rural background site Frýdlant. Non-refractory PM1 was evaluated in two seasons of\n2021. The positive matrix factorization with the multi-linear engine was used to determine the sources of OA at Frýdlant site, with four factors resolved both in winter and\nsummer.
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Chemical composition and sources of atmospheric aerosols at the Frýdlant background station
Lhotka, Radek ; Pokorná, Petra ; Vodička, Petr ; Zíková, Naděžda ; Ondráček, Jakub ; Arora, S. ; Poulain, L. ; Hermann, H. ; Schwarz, Jaroslav ; Ždímal, Vladimír
This study assesses the variability of organic aerosol (OA) sources monitored at the rural background site Frýdlant. Non-refractory PM1 was evaluated in two seasons of\n2021. The positive matrix factorization with the multi-linear engine was used to determine the sources of OA at Frýdlant site, with four factors resolved both in winter and\nsummer.
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Genetic variability in sporadic colorectal cancer: Searching for novel risk, prognostic and predictive biomarkers.
Jirásková, Kateřina ; Vodička, Pavel (advisor) ; Machoň, Ondřej (referee) ; Eckschlager, Tomáš (referee)
Colorectal cancer (CRC) is a major public health problem worldwide. Despite improvements in the diagnostic process and advancement in the treatment methods, the prognosis remains poor. To improve survival rates, it is important to identify people with the predisposition for CRC and to detect the potentially curable early stage of the disease. Furthermore, identifying those who would have an adverse clinical outcome associated with a particular chemotherapy would help to avoid redundant chemotherapy burden in patients and contribute to enhanced therapeutic efficacy, while minimizing treatment-related toxicity. The aim of the Thesis was to search for novel promising diagnostic, prognostic and predictive DNA-based biomarkers of sporadic form of CRC. As each patient is genetically unique, these biomarkers would aid clinicians in better diagnosis and/or in the selection of an optimal type of therapy for an individual CRC patient based on their molecular profile. In order to explore this issue, we investigated several candidate genes in healthy individuals as well as in newly diagnosed cancer patients. The major outcomes of this PhD study, which were fully reported in seven publications included in the present Thesis, are 1) The observation of several candidate single nucleotide polymorphisms in microRNA...
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Characterization of the porcine induced pluripotent stem cells
Svobodová, Eliška ; Vodička, Petr (advisor) ; Tlapáková, Tereza (referee)
Induced pluripotent stem cells (iPSCs) are the cells established by introducing several transcription factors into the somatic cells and culturing them in embryonal stem cell (ESCs) culture conditions. Factors used for the establishment of the first iPSCs are OCT3/4, SOX2, KLF4 and c-MYC. IPSCs created by these means resemble closely to the ESCs. IPS technology may be used to derive iPS cells of individual pacients and apply these cells for their treatment in the cases where the use of ESCs represents an ethical and imunological problem. Therefore, it is important to establish an appropriate animal model for the longtime safety testing of iPSCs before acceding to their medicinal aplication.
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Urban street dust: mineralogy and shape analysis of aerosolized fraction
Lebedenko, Viktoriia ; Hovorka, Jan (advisor) ; Vodička, Petr (referee)
One important source of coarse particulate matter in urban atmosphere is the resuspended street dust. The aim of this study was to determine the emission potential of street dust samples, to conduct shape and mineralogical analysis of resuspendable fraction and on the bases of the findings carry out a comparison between the different sampling sites. The dust samples were collected in February 2014 in three cities: Ostrava, Prague and Pilsen. For the purpose of this study, nine samples from the selected sites were dispersed in a resuspension chamber. The samples were collected in the center of every city in the following locations: the main square, the tram railway and the curbside. Morphological and elemental analysis was performed using a Scanning Electron Microscope with EDS detector. The presence of mineral components such as quartz, chlorite, calcite, feldspar and kaolinite was observed. In samples from Ostrava were found spherical-shaped particles composed of iron oxides. The samples of Pilsen contained amphibole mineral fibers - actinolite. X-ray Powder Diffraction at high sensitivity showed the presence of amphibole asbestos in the samples from Ostrava and Prague. The mass of each size fraction of resuspended samples was determined. The mass size distribution was bimodal (2.5 µm and 8 µm),...
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Mutagenic and Antimutagenic Effect of Environmental Substances
Langová, Martina ; Vodička, Pavel (advisor) ; Sedmíková, Markéta (referee) ; Novotná, Božena (referee)
In the present study were used reference mutagens which effects mutagenic activity in prokaryotic and eukaryotic testing systems. Aflatoxin B1 (AFB1) is one of the most thoroughly studied and the well known mycotoxin with carcinogenic activity. 2-Amino-3-methylimidazol[4,5-f] quinoline (IQ) in isolated form has been used as another reference mutagen. These compounds are indirect acting genotoxins, i.e. need metabolic activation to exert genotoxic effect. As a third reference mutagen in the present study there has been chosen N-nitroso-N-methylurea (MNU) which is direct acting carcinogenic N-nitroso compound. The aim of the study was to investigate antimutagenic effects of ellagic acide (EA), resveratrol (RES), diallyl sulfide (DAS) and phenetyl isothiocyanate (PEITC) on the mutagenicity of the mutagens. The Ames test with Salmonella typhimurium TA98 and TA100 strains was used for the evaluation of antimutagenic effect of EA, RES, DAS and PEITC in vitro.
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