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Joint EEG-fMRI analysis based on heuristic model
Janeček, David ; Kremláček, Jan (referee) ; Labounek, René (advisor)
The master thesis deals with the joint EEG-fMRI analysis based on a heuristic model that describes the relationship between changes in blood flow in active brain areas and in the electrical activity of neurons. This work also discusses various methods of extracting of useful information from the EEG and their influence on the final result of joined analysis. There were tested averaging methods of electrodes interest, decomposition by principal components analysis and decomposition by independent component analysis. Methods of averaging and decomposition by PCA give similar results, but information about a stimulus vector can not be extracted. Using ICA decomposition, we are able to obtain information relating to the certain stimulation, but there is the problem in the final interpretation and selection of the right components in a blind search for variability coupled with the experiment. It was found out that although components calculated from the time sequence EEG are independent for each to other, their spectrum shifts are correlated. This spectral dependence was eliminated by PCA / ICA decomposition from vectors of spectrum shifts. For this method, each component brings new information about brain activity. The results of the heuristic approach were compared with the results of the joined analysis based on the relative and absolute power approach from frequency bands of interest. And the similarity between activation maps was founded, especially for the heuristic model and the relative power from the gamma band (20-40Hz).
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Non-contact detection of physiological parameters from image sequences
Bršlicová, Tereza ; Janoušek, Oto (referee) ; Kolář, Radim (advisor)
This thesis deals with the study of contactless and non-invasive methods for estimating heart and respiratory rate. Non-contact measurement involves sensing persons by using camera and the values of the physiological parameters are then assessed from the sets of image sequences by using suitable approaches. The theoretical part is devoted to description of the various methods and their implementation. The practical part describes the design and realization of the experiment for contactless detection of heart and respiratory rate. The experiment was carried out on 10 volunteers with a known heart and respiratory rate, which was covered by using of a sophisticated system BIOPAC. Processing and analysis of the measured data was conducted in software environment Matlab. Finally, results from contactless detection were compared with the reference from measurement system BIOPAC. Experiment results are statistically evaluated and discussed.
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A comparison of effective and functional connectivity methods in fMRI
Gajdoš, Martin ; Schwarz, Daniel (referee) ; Jan, Jiří (advisor)
Functional magnetic resonance imaging (fMRI) is recent important method, used in neuroimaging. The aim of this thesis is to develop software tool for comparison of two methods for functional and effective connectivity estimation. In this thesis are described the basics of magnetic resonance imaging, fMRI, basic terms of fMRI experiments and generally are described methods of functional and effective connectivity. Then are more detailed mentioned methods of dynamic causal modeling (DCM), Granger causal modeling (GCM) and independent component analysis (ICA). Practical implementation of DCM in toolbox SMP and ICA in toolbox GIFT is also mentioned. In purpose to describe behavior of DCM and GCM in dependence on several parameters are performed Monte Carlo simulations. Then the concept and realization of software tool for simulating connectivity and comparison of DCM and GCM are described. Finally results of DCM and GCM comparison and results of Monte Carlo simulations are discussed.
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Implemetation of algorithms for blind source separation in C/C++ language
Funderák, Marcel ; Malý, Jan (referee) ; Míča, Ivan (advisor)
This thesis is describing one of the methods of Blind Source Separation (BSS) which is Independent Component Analysis. There is shown some brief introduction to the theory behind in which there are explained some basic findings. These findings are important for understanding the theory behind algorithms of ICA. These theoretical findings include primarily explanations of basic knowledge of statistics science. In next part there are described methods which are advisable for preprocessing of input signals – mainly Principal Component Analysis (PCA) and whitening of signals. Mainly whitening is very important part of solution of ICA algorithms. Then there are described different ICA algorithm solutions and especially introduction in this problematic. FastICA algorithm description is mainly depicted because it is very good for computer processing since it is strong and it is less computer demanding than other algorithms. After that follows implementation of one of the ICA algorithm in C++ programming language. FastICA algorithm for complex valued signal was chosen.
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Multi-channel Methods of Speech Enhancement
Zitka, Adam ; Balík, Miroslav (referee) ; Smékal, Zdeněk (advisor)
This thesis deals with multi-channel methods of speech enhancement. Multichannel methods of speech enhancement use a few microphones for recording signals. From mixtures of signals, for example, individual speakers can be separated, noise should be reduced etc. with using neural networks. The task of separating speakers is known as a cocktail-party effect. The main method of solving this problem is called independent component analysis. At first there are described its theoretical foundation and presented conditions and requirements for its application. Methods of ICA try to separate the mixtures with help of searching the minimal gaussian properties of signals. For the analysis of independent components are used different mathematical properties of signals such as kurtosis and entropy. Signals, which were mixed artificially on a computer, can be relatively well separated using, for example, FastICA algorithm or ICA gradient ascent. However, difficult is situation, if we want to separate the signals created in the real recording enviroment, because the separation of speech people speaking at the same time in the real environment affects other various factors such as acoustic properties of the room, noise, delays, reflections from the walls, the position or the type of microphones, etc. Work presents aproach of independent component analysis in the frequency domain, which can successfully separate also recordings made in the real environment.
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Comparison of success rate of multi-channel methods of speech signal separation
Přikryl, Petr ; Zezula, Radek (referee) ; Míča, Ivan (advisor)
The separation of independent sources from mixed observed data is a fundamental problem in many practical situations. A typical example is speech recordings made in an acoustic environment in the presence of background noise or other speakers. Problems of signal separation are explored by a group of methods called Blind Source Separation. Blind Source Separation (BSS) consists on estimating a set of N unknown sources from P observations resulting from the mixture of these sources and unknown background. Some existing solutions for instantaneous mixtures are reviewed and in Matlab implemented , i.e Independent Componnent Analysis (ICA) and Time-Frequency Analysis (TF). The acoustic signals recorded in real environment are not instantaneous, but convolutive mixtures. In this case, an ICA algorithm for separation of convolutive mixtures in frequency domain is introduced and in Matlab implemented. This diploma thesis examines the useability and comparisn of proposed separation algorithms.
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