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Study of Reversible Adsorption of Nucleic Acids on Solid Surfaces
Trachtová, Štěpánka ; Zendulková,, Dagmar (referee) ; Drbohlav,, Jan (referee) ; Rittich, Bohuslav (advisor)
Magnetically driven separation techniques using magnetic solid carriers are one of modern methods to speed up and facilitate the previously used separation and purification procedures. The use of magnetic particles in biology imposes strict requirements on physical, and chemical properties of the particles, including low toxicity, biocompatibility and non-interference with the chemical environment in diagnostics. The aim of this study was to evaluate carboxyl-functionalised magnetic non-porous P(HEMA-co-GMA), P(HEMA-co-EDMA), PGMA, silica-coated lanthanum manganese peroskvite La0.75Sr0.25MnO3 and thermosensitive poly(N-isopropylacrylamide) microspheres – P(NIPAAm) for DNA isolation from different types of complex food and environmental samples containing PCR inhibitors. The solid-phase reversible immobilisation (SPRI) of nucleid acids on microsphere surface and the release of adsorbed DNA were optimised. DNA from real samples (milk products and probiotic food suplements, mouse faeces) was apparently adsorbed on solid particles from the aqueous phase system composed of 16% PEG 6000 and 2M NaCl. The conditions of the subsequent release absorbed DNA to the elution buffer (pH of elution buffer, temperature and time of elution) were optimized. The quality of eluted DNA and the presence of target DNA were examined by PCR and q-PCR using domain-specific Bacteria and genus-specific Lactobacillus primer set. Real-time PCR was used for an estimation of the PCR interference by comparing the amplification efficiencies of purified DNA containing solid nanoparticles with the DNA standards free of any nanoparticles
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Methods for detection of antimicrobial properties of lactic acid bacteria
Vránová, Petra ; Němcová, Andrea (referee) ; Trachtová, Štěpánka (advisor)
Lactic acid bacteria are classified as probiotics producing substances that act against microorganisms. These antimicrobial substances include organic acids, carbon dioxide, hydrogen peroxide and bacteriocins. Currently, the focus is on bacteriocins, which are used in the food and pharmaceutical industries. The aim of this thesis is creating an overview of antimicrobial properties of lactic acid bacteria, methods of their determination and their applications in the food industry. The experimental part deals with identification of lactic acid bacteria present in selected samples of bacterial DNA. In addition, we tested for bacteriocin Gassericin K7A-producing gene. Molecular diagnostic methods such as real-time polymerase chain reaction (qPCR) and conventional polymerase chain reaction were used to distinguish bacterial DNA as well as the bacteriocin.
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Probiotics in food products
Silná, Renata ; Trachtová, Štěpánka (referee) ; Španová, Alena (advisor)
Probiotics are living microorganisms with a positive effect on the consumer when they are added to food in adequate amount. The best known probiotic are lactic acid bacteria and yeast Saccaromyces cerevisiae var. boulardii. The theoretical part of the thesis is focused on using probiotics microorganisms in food. In the experimental part of the thesis were prepared crude lysates from three food products and the presence of bacterial DNA was proved by PCR method.
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Utilization of wastes
Šachlová, Žaneta ; Trachtová, Štěpánka (referee) ; Omelková, Jiřina (advisor)
Bachelor's thesis was focused on recovery from food processing industries, where she described the issue of the types of waste handling, recycling, processing by-products in the food industry, waste prevention. Attention is also given to food from industrial wastes such as sugar industry, production of starch and flour, meat, dairy, production of fats and oils, fruit and vegetable processing, production of malt and beer, wine, alcohol and yeast. There were considered suitable packaging materials in food, different waste treatment. Important microorganisms are set out using in waste treatment. At the conclusion of this study was designed a perfect procedure how to dispose with waste and included legislation on this subject.
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Imunomagnetic separation of lactic acid bacteria using magnetic microparticles functionalised by antibodies
Vaňásek, Jakub ; Španová, Alena (referee) ; Trachtová, Štěpánka (advisor)
Immunomagnetic separation is based on binding of antibody with antigen, where antibody is bound to magnetic particle. In this thesis there were used particles of magnetic pearl cellulose with antiLactobacillus and antiBifidobacterium antibodies. Immunomagnetic separation method was optimalized and verified for its efficiency and specifity with bacterial and yeast cells. This cells were identified by polymerase chain reaction. Efficiency of immunomagnetic separation was verified on probiotic meat product, where Lactobacillus cells were isolated. With DNA from isolated Lactobacillus cells the high resolution melting was performed. The results show presence of several bacterial strains of Lactobacillus species.
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Moulds and residential buildings
Dvořák, Tomáš ; Trachtová, Štěpánka (referee) ; Omelková, Jiřina (advisor)
Bachelor’s thesis is aimed at moulds and residential buildings. At moulds occurrence and at conditions for their growth and reproduction. Thesis defined their distribution, morphology, metabolism and type of reproduction. Describe most important genera of moulds, their identification and procedure during their elimination. Practical part is aimed at two methods of determination in two different types of residential building, in prefab house and in single family house. The object of practical part was to determinate the genus of occurring moulds
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DNA analysis of nonpathogenic clostridia isolated from cheeses
Chroboková, Maria ; Trachtová, Štěpánka (referee) ; Španová, Alena (advisor)
Polymerase chain reaction (PCR) is a molecular method which allows in vitro replication of nucleic acids. It allows the identification and quantification of microorganisms or to prove specific gene sequentions in different matrices of biological origin. Some nonpathogenic species of genus Clostridium cause damages of cheeses, so their identification and quantification is very important in cheesemaking. In this thesis, specific primers for genus Clostridium were tested. Bacterial DNA from culture collection strains and from strains isolated from damaged cheeses were used. Genus-specific region for Clostridium was amplified using specific primers. The PCR products (619 bp) were detected using electrophoresis in 1,8% agarose gel. Genus-specific character of primers was confirmed. DNA of Lactobacillus was used for negative control.
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Immobilization of selected glycanohydrolases
Reichstädter, Marek ; Trachtová, Štěpánka (referee) ; Omelková, Jiřina (advisor)
The theoretical part of this thesis deals with cellulolytic enzymes, their microbial producers, the possibilities of using such enzymes in the industry and how can be enzymes - not only cellulolytic - immobilized. Experimental part examines the preparations created by immobilizing various amounts of the commercially used cellulolytic complex Cellulast 1.5L onto various synthetic carriers made of polyethylene terephthalate - commercially used Sorsilen, PET carrier and glutaraldehyde-treated PET carrier. Enzyme activity of these preparations was determined by Somogyi - Nelson method by spectrophotometry. For the highest activity immobilized preparation was determined the temperature- and the pH-optimum. The difference in effects change between the free and immobilized enzyme by measuring viscosity decrease of the substrate depending on the degradation of glycosidic bonds was also studied.
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