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Clustering of Biological Sequences
Kubiš, Radim ; Burgetová, Ivana (referee) ; Martínek, Tomáš (advisor)
One of the main reasons for protein clustering is prediction of structure, function and evolution. Many of current tools have disadvantage of high computational complexity due to all-to-all sequence alignment. If any tool works faster, it does not reach accuracy as other tools. Further disadvantage is processing on higher rate of similarity but homologous proteins can be similar with less identity. The process of clustering often ends when reach the condition which does not reflect sufficient quality of clusters. Master's thesis describes the design and implementation of new tool for clustering of protein sequences. New tool should not be computationally demanding but it should preserve required accuracy and produce better clusters. The thesis also describes testing of designed tool, evaluation of results and possibilities of its further development.
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Mobile Application for Travelling Support
Kubiš, Radim ; Burget, Radek (referee) ; Očenášek, Pavel (advisor)
Bachelor's thesis describes the design and implementation of application for travellers. The application is built on the Android mobile platform, uses the GPS module of device and requires the Internet access for most functions. The user of this application may track his waypoints, search for services around, look up current exchange rates of world currencies, record travel costs, access to the online translator, publish informations from journey to Facebook, display information about GPS position and display actual address. The application uses Google maps, the static data are stored in SQLite database, works with asynchronous tasks and is written in the Java programming language. The thesis also describes testing of the application and the possibilities of its further development.
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Mobile Application for Travelling Support
Kubiš, Radim ; Burget, Radek (referee) ; Očenášek, Pavel (advisor)
Bachelor's thesis describes the design and implementation of application for travellers. The application is built on the Android mobile platform, uses the GPS module of device and requires the Internet access for most functions. The user of this application may track his waypoints, search for services around, look up current exchange rates of world currencies, record travel costs, access to the online translator, publish informations from journey to Facebook, display information about GPS position and display actual address. The application uses Google maps, the static data are stored in SQLite database, works with asynchronous tasks and is written in the Java programming language. The thesis also describes testing of the application and the possibilities of its further development.
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Clustering of Biological Sequences
Kubiš, Radim ; Burgetová, Ivana (referee) ; Martínek, Tomáš (advisor)
One of the main reasons for protein clustering is prediction of structure, function and evolution. Many of current tools have disadvantage of high computational complexity due to all-to-all sequence alignment. If any tool works faster, it does not reach accuracy as other tools. Further disadvantage is processing on higher rate of similarity but homologous proteins can be similar with less identity. The process of clustering often ends when reach the condition which does not reflect sufficient quality of clusters. Master's thesis describes the design and implementation of new tool for clustering of protein sequences. New tool should not be computationally demanding but it should preserve required accuracy and produce better clusters. The thesis also describes testing of designed tool, evaluation of results and possibilities of its further development.
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