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National Repository of Grey Literature 2 records found  Search took 0.00 seconds. 
Analysis of the Tools for Detecting Similarities between Tertiary Protein Structures
 Trlica, Jiří ; Vogel, Ivan (referee) ; Bendl, Jaroslav (advisor)
Alignment of the three-dimensional structures of proteins is an essential task in bioinformatics. Because there are many tools offering this functionality, only a limited subset of them was chosen for comparison (DALI, LOCK 2, SPALIGN, MUSTANG and CLICK). These tools vary in the principle of calculation. Their performance was measured on three proteins, which represent main protein classes (all-α, all-β, α/β). These proteins were tested against a subset of PDB database containing 2 357 records. The results were visualized by ROC curves and the tools were compared by their area under ROC curve (AUC metric). According to this metric, the best results were obtained for SPALIGN.
Detailed record
Analysis of the Tools for Detecting Similarities between Tertiary Protein Structures
 Trlica, Jiří ; Vogel, Ivan (referee) ; Bendl, Jaroslav (advisor)
Alignment of the three-dimensional structures of proteins is an essential task in bioinformatics. Because there are many tools offering this functionality, only a limited subset of them was chosen for comparison (DALI, LOCK 2, SPALIGN, MUSTANG and CLICK). These tools vary in the principle of calculation. Their performance was measured on three proteins, which represent main protein classes (all-α, all-β, α/β). These proteins were tested against a subset of PDB database containing 2 357 records. The results were visualized by ROC curves and the tools were compared by their area under ROC curve (AUC metric). According to this metric, the best results were obtained for SPALIGN.
Detailed record

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