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Detection of bark beetle attack of Norway spruce using spectral and biophysical data at different hierarchical levels
Vesecká, Martina ; Albrechtová, Jana (advisor) ; Tomášková, Ivana (referee)
There was created an overview of key aspects for a correct understanding of the dynamics between bark beetle and Norway spruce, especially the way of life of the beetle and the time course of its life cycles. It is absolutely essential to understand this interaction for a timely and effective solution to the bark beetle calamity. Furthermore, the mutual interaction of beetle and tree is discussed in detail in the text. Great emphasis is placed on the description of the spruce's defense mechanisms and the consequences of the attack. In particular, biophysical changes in the needles, which cause a change in the spectral behaviour of the leaves and thus the entire forest stand. Using sensor capable of measuring the reflectance of surfaces, it is possible to detect a bark beetle-infested tree much earlier than changes in the needles could be detected by the naked eye and remove it while it is still colonized by the beetle and not spreading further into surrounding trees. This is key to managing not only the current bark beetle calamity. An overview of case studies is given in the thesis, where the use of spectral methods at different hierarchical levels was applied and satisfactory accuracy in the identification of early infested trees was achieved. Key words: Norway spruce, bark beetle, bark beetle...
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Laboratory/Field Spectroscopy and Remote Sensing Image Data for Vegetation Studies
Červená, Lucie ; Kupková, Lucie (advisor) ; Pavelka, Karel (referee) ; Müllerová, Jana (referee)
Dominant vegetation species of two structurally and functionally different montane ecosystems were studied by means of laboratory and field spectroscopy and remote sensing image data: (1) a homogeneous human-influenced evergreen coniferous forest represented by a Norway spruce forest in the Krušné hory Mountains and (2) a heterogeneous natural ecosystem of a relict arctic-alpine tundra in the Krkonoše Mountains with predominance of grasses. The first part dealing with the Norway spruce forest is especially focused on the methods of laboratory spectroscopy. The assessment of Norway spruce stands on a regional and a global scales requires detailed knowledge of their spectral properties at the level of needles and shoots in the beginning, but ground research is very time-demanding. Open spectral libraries could help to get more ground-truth data for subsequent analysis of tree species in forests ecosystems. However, the problem may arise with the comparability of spectra taken by different devices. The present thesis focuses on a comparability of spectra measured by a field spectroradiometer coupled with plant contact probe and/or two integrating spheres (Paper 3) and proves the significant differences in spruce needle spectra measured by the contact probe and integrating sphere, spectra of...
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Laboratory spectroscopy for selected Krkonoše Mts. tundra vegetation species
Tomcová, Jana ; Červená, Lucie (advisor) ; Lhotáková, Zuzana (referee)
Laboratory spectroscopy for selected Krkonoše Mts. tundra vegetation species The diploma thesis is focused on testing the methodologies of measuring the reflectance of grasses from the tundra of Krkonoše Mountains (Nardus stricta, Molinia caerulea, Calamagrostis villosa). The spectoradiometer ASD FieldSpec 4 Wide-Res with added contact probe ASD Plant Probe is used for measurements. Since it is not common to measure such narrow leaves that do not cover the whole FOV, the thesis is looking for methodologies that are the most repeatable and influenced by a minimum of errors. Factors influencing the measurement results are also monitored. Furthermore, the differentiation of the studied species is observed based on their spectral properties. Based on the measured data the medians and standard deviations are calculated and compared among each other. An analysis of variance (ANOVA) is used to determine the bands where the influence of individual factors is more apparent and where the individual grasses are distinguishable. As the most suitable methodologies for measuring grasses depend on the grasses structures and properties, the best methodology is different for each of selected species. The two layer leaf measurement is most suitable for the Nardus stricta, the measurement of the abaxial sides of leaves fits...
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Optical properties of the leaf in relation to its anatomical traits
Neuwirthová, Eva ; Albrechtová, Jana (advisor) ; Tomášková, Ivana (referee) ; Písek, Jan (referee)
Plant functional traits at the leaf level are commonly used to predict ecosystem responses to environmental factors and describe global climate change processes at the ecosystem level. Plant functional traits include both leaf biophysical traits (e.g., photosynthetic pigment content and water content) and structural traits (e.g., leaf thickness and proportion of photosynthetic and non-photosynthetic tissues). Leaf biophysical and structural traits can be detected either destructively in the laboratory or non-destructively using leaf optical properties. Although estimating chlorophyll content from leaf optical properties is a well-established methodology, the influence of leaf structure and internal anatomy on leaf optical properties has only been thoroughly studied in the last two decades. The papers included in my thesis and my thesis itself are mostly focused on the study of typical European deciduous trees of temperate and hemiboreal forests with leaves having a dorsiventral structure (i.e., the mesophyll is differentiated into palisade and spongy parenchyma). Furthermore, my thesis includes a study on the effect of leaf surface structural traits on optical properties. In this study, two groups of phylogenetically close herbs with comparable internal leaf structure were used (mutants of...
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Laboratory spectroscopy for selected Krkonoše Mts. tundra vegetation species
Tomcová, Jana ; Červená, Lucie (advisor) ; Lhotáková, Zuzana (referee)
Laboratory spectroscopy for selected Krkonoše Mts. tundra vegetation species The diploma thesis is focused on testing the methodologies of measuring the reflectance of grasses from the tundra of Krkonoše Mountains (Nardus stricta, Molinia caerulea, Calamagrostis villosa). The spectoradiometer ASD FieldSpec 4 Wide-Res with added contact probe ASD Plant Probe is used for measurements. Since it is not common to measure such narrow leaves that do not cover the whole FOV, the thesis is looking for methodologies that are the most repeatable and influenced by a minimum of errors. Factors influencing the measurement results are also monitored. Furthermore, the differentiation of the studied species is observed based on their spectral properties. Based on the measured data the medians and standard deviations are calculated and compared among each other. An analysis of variance (ANOVA) is used to determine the bands where the influence of individual factors is more apparent and where the individual grasses are distinguishable. As the most suitable methodologies for measuring grasses depend on the grasses structures and properties, the best methodology is different for each of selected species. The two layer leaf measurement is most suitable for the Nardus stricta, the measurement of the abaxial sides of leaves fits...
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Laboratory/Field Spectroscopy and Remote Sensing Image Data for Vegetation Studies
Červená, Lucie ; Kupková, Lucie (advisor) ; Pavelka, Karel (referee) ; Müllerová, Jana (referee)
Dominant vegetation species of two structurally and functionally different montane ecosystems were studied by means of laboratory and field spectroscopy and remote sensing image data: (1) a homogeneous human-influenced evergreen coniferous forest represented by a Norway spruce forest in the Krušné hory Mountains and (2) a heterogeneous natural ecosystem of a relict arctic-alpine tundra in the Krkonoše Mountains with predominance of grasses. The first part dealing with the Norway spruce forest is especially focused on the methods of laboratory spectroscopy. The assessment of Norway spruce stands on a regional and a global scales requires detailed knowledge of their spectral properties at the level of needles and shoots in the beginning, but ground research is very time-demanding. Open spectral libraries could help to get more ground-truth data for subsequent analysis of tree species in forests ecosystems. However, the problem may arise with the comparability of spectra taken by different devices. The present thesis focuses on a comparability of spectra measured by a field spectroradiometer coupled with plant contact probe and/or two integrating spheres (Paper 3) and proves the significant differences in spruce needle spectra measured by the contact probe and integrating sphere, spectra of...
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Assessment of lignin content in needles of Norway Spruce (Picea abies L. Karst.) using laboratory and image spectroscopy
Suchá, Renáta ; Kupková, Lucie (advisor) ; Brodský, Lukáš (referee)
The master thesis deals with determination of selected biochemicals (lignin, carotenoids, water) content in Norway spruce needles using laboratory and imaging spectroscopy. The first part of thesis summarizes literature dealing with methods of estimating lignin and other biochemicals content. Three types of data are used in this thesis: 1. spectra measured by contact probe and ASD FieldSpec 4 Wide Res spectroradiometer, 2. spectra measured by integrating sphere and spectroradiometer and 3. aerial hyperspectral image data acquired by APEX sensor. The most useful transformation methods - first derivative and continuum removal are applied to the spectrum. Further the linear relationship between measured spectrum and content of biochemicals is analysed. Stepwise multiple linear regression is applied to select suitable wavelengths for modeling of biochemicals content in spruce needles. The model is also calculated and applied on the level of image hyperspectral data. Maps of lignin content in Norway spruce are the final output of these part of this. Next part of the thesis compares spectra measured by contact probe and spectra measured by integrating sphere. Diffrerence between the studied areas based on biochemicals content in spruce needles and several chemical elements in the soil and based on...
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