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Development and differentiation of different types of yeast colonies: Regulation of metabolic diversification and development of cells with novel properties
Maršíková, Jana
Yeasts are unicellular organisms, but on a solid substrate they are capable of forming complex organized structures that behave like primitive multicellular organisms. Examples of these structures include colonies and biofilms, whose cells interact with each other, coordinate their growth and development, differentiate spatially and form specialized cell subpopulations in which specific processes and regulatory pathways occur. The basis of cellular differentiation and specialization is the formation of gradients of nutrients, metabolites and signaling molecules. Thus, multicellular yeast communities differ significantly from planktonic populations in their characteristics. The aim of this work is to increase knowledge related to the development and differentiation of both smooth and structured colonies of the yeast Saccharomyces cerevisiae. The literature introduction of the thesis provides an overview of the current knowledge on the development of yeast colonies and biofilms, especially of S. cerevisiae species, and also includes selected regulations important for the formation of multicellular populations. The thesis provides insights into the antagonistic function of the transcriptional regulators Cyc8p and Tup1p in the development of structured biofilm colonies. Genome-wide transcriptomic...
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Development and differentiation of different types of yeast colonies: Regulation of metabolic diversification and development of cells with novel properties
Maršíková, Jana ; Palková, Zdena (advisor) ; Heidingsfeld, Olga (referee) ; Demnerová, Kateřina (referee)
Yeasts are unicellular organisms, but on a solid substrate they are capable of forming complex organized structures that behave like primitive multicellular organisms. Examples of these structures include colonies and biofilms, whose cells interact with each other, coordinate their growth and development, differentiate spatially and form specialized cell subpopulations in which specific processes and regulatory pathways occur. The basis of cellular differentiation and specialization is the formation of gradients of nutrients, metabolites and signaling molecules. Thus, multicellular yeast communities differ significantly from planktonic populations in their characteristics. The aim of this work is to increase knowledge related to the development and differentiation of both smooth and structured colonies of the yeast Saccharomyces cerevisiae. The literature introduction of the thesis provides an overview of the current knowledge on the development of yeast colonies and biofilms, especially of S. cerevisiae species, and also includes selected regulations important for the formation of multicellular populations. The thesis provides insights into the antagonistic function of the transcriptional regulators Cyc8p and Tup1p in the development of structured biofilm colonies. Genome-wide transcriptomic...
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Role of the low-molecular metabolites in the development of yeast colonies
Bezdíčka, Martin ; Palková, Zdena (advisor) ; Dostál, Jiří (referee)
Previous research of colonies formed by yeast Saccharomyces cerevisiae growing on glycerol agar medium revealed two major cell types of U and L cells that are formed within these colonies. This colonial cell differentiation seem to be caused by communication among yeast cells as well as whole colonies and affected by changes in the environment (for example changes in nutrients). Studies of U and L cells showed that U cells are more resistant against biological, chemical and physical stresses than L cells. The aim of this thesis was to isolate U and L cell types and investigate their resistance against selected low molecular weight chemical substances produced in Ehrlich pathway. Ehrlich pathway was discovered in 1907 and was classified as amino acid catabolic pathway in yeast S. cerevisiae. The low molecular intermediates are formed in Ehrlich pathway which are called fusel (original name from German) alcohols and acids. These chemical substances are widely used in food industry and cosmetics especially because of their aroma. Several studies provided indications that these chemical substances may affect development of colonies and important yeast functions such as switching to the pseudohypfal growth of S. cerevisiae cells. Some chemical substances of the Ehrlich pathway were selected and their effects on...
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Nucleotide metabolism in the development of Saccharomyces cerevisiae colony
Dvořáková, Markéta ; Palková, Zdena (advisor) ; Seydlová, Gabriela (referee)
Yeasts are unicellular microorganisms which are able to form colonies. The morphology of colonies is characteristic for the strain and differs according to particular growth conditions. Saccharomyces cerevisiae colonies are able to produce volatile ammonia which functions as a signalling molecule alarming nutrient depletion (PALKOVÁ et al. 1997). Changes in gene expression, metabolism and ammonia production occur during the development of giant S. cerevisiae colonies. Genes with changes in expression have been identified to be involved in ammonia transport, amino acid metabolism and also in nucleotide metabolism. Genes, whose deletion may affect the induction of ammonia production have been described (ČÁP et al., 2010), (VÁCHOVÁ a PALKOVÁ 2005), (PALKOVÁ et al. 2002). This work is focused on studying of an impact of deletions of selected genes involved in nucleotide metabolism, as well as of changes in extracellular concentrations of different bases on growth, morphology, ammonia production, cell morphology and differentiation of giant S. cerevisiae colonies. S. cerevisiae strains producing Gfp-tagged proteins (Ade4p-Gfp, Adk1p-Gfp, Urk1p-Gfp, Fcy2p-Gfp, Fur4p-Gfp, Fcy22p-Gfp) have been constructed and analyzed. Development of S. cerevisiae giant colonies with deletions of selected genes (ADE5,7,...
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