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Increasing Resolution in Perfusion Magnetic Resonance Imaging Using Compressed Sensing
Mangová, Marie ; Polec,, Jaroslav (referee) ; Šmídl, Václav (referee) ; Rajmic, Pavel (advisor)
Perfusion magnetic resonance imaging is a medical diagnostic method which requires high spatial and temporal resolution simultaneously to capture dynamics of an intravenous contrast agent which is used to perfusion measurement. However, magnetic resonance imaging has physical limits which do not allow to have this resolution simultaneously. This thesis deals with compressed sensing which enables to reconstruct measured data from relatively few acquired samples (below Nyquist rate) while resolution required to perfusion analysis is increased. This aim could be achieved with suitably proposed apriory information about sensed data and model proposal. The reconstruction is then done as an optimization problem. Doctoral thesis brings several new reconstruction models, further proposes method to debias this estimates and examines influence of compressed sensing onto perfusion parameters. Whole thesis is ended with extension of compressed sensing into three-dimensional data. Here, the influence of reconstruction onto perfusion parameters is also described. In summary, the thesis shows that due to compressed sensing, temporal resolution can be increased with the fixed spatial resolution or spatial resolution can be increased with the fixed temporal resolution.
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Compressed sensing in magnetic resonance perfusion imaging.
Mangová, Marie ; Veselý, Vítězslav (referee) ; Rajmic, Pavel (advisor)
Magnetic resonance perfusion imaging is a today's very promising method for medicine diagnosis. This thesis deals with a sparse representation of signals, low-rank matrix recovery and compressed sensing, which allows overcoming present physical limitations of magnetic resonance perfusion imaging. Several models for reconstruction of measured perfusion data is introduced and numerical methods for their software implementation, which is an important part of the thesis, is mentioned. Proposed models are verified on simulated and real perfusion data from magnetic resonance.
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Clean photo out of corrupted videosequence
Berky, Martin ; Záviška, Pavel (referee) ; Rajmic, Pavel (advisor)
This diploma thesis deals with separation of moving objects from static unchanging background in video sequence. Thesis contains description of common method of separation and approach based sparse signal representation. In the practical part of thesis, there were created video sequences, which are used to verify designed algorithm implemented in Matlab interface, disegned to obtain separated background from damaged video frames.
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Exploitng sparse signal representations in capturing and recovery of nuclear magnetic resonance data
Hrbáček, Radek ; Zátyik, Ján (referee) ; Rajmic, Pavel (advisor)
This thesis deals with the nuclear magnetic resonance field, especially spectroscopy and spectroscopy imaging, sparse signal representation and low-rank approximation approaches. Spectroscopy imaging methods are becoming very popular in clinical praxis, however, long measurement times and low resolution prevent them from their spreading. The goal of this thesis is to improve state of the art methods by using sparse signal representation and low-rank approximation approaches. The compressed sensing technique is demonstrated on the examples of magnetic resonance imaging speedup and hyperspectral imaging data saving. Then, a new spectroscopy imaging scheme based on compressed sensing is proposed. The thesis deals also with the in vivo spectrum quantitation problem by designing the MRSMP algorithm specifically for this purpose.
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Clean photo out of corrupted videosequence
Berky, Martin ; Záviška, Pavel (referee) ; Rajmic, Pavel (advisor)
This diploma thesis deals with separation of moving objects from static unchanging background in video sequence. In this thesis are described common method of separation and access using sparse signal representation. In the practical part of thesis was created video sequences, on which is verified the designed algorithm, implemented in Matlab, for obtaining background from damaged video frames and comparing this methods.
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Compressive sampling for effective target tracking in a sensor network
Klimeš, Ondřej ; Veselý, Vítězslav (referee) ; Rajmic, Pavel (advisor)
The master's thesis deals with target tracking. For this a decentralized sensor network using distributed particle filter with likelihood consensus is used. This consensus is based on a sparse representation of local likelihood function in a suitable chosen dictionary. In this thesis two dictionaries are compared: the widely used Fourier dictionary and our proposed B-splines. At the same time, thanks to the sparsity of distributed data, it is possible to implement compressed sensing method. The results are compared in terms of tracking error and communication costs. The thesis also contains scripts and functions in MATLAB.
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Magnetic resonance imaging via optimization methods
Onderlička, Tomáš ; Šorel,, Michal (referee) ; Rajmic, Pavel (advisor)
Magnetic resonance imaging is a diagnostic method to form images of the organs in the body. Long acquisition times are the main disadvantage, however it is possible to accelerate the data acquisition with the method of compressed sensing by sensing fewer samples and formulating an optimization method for image reconstruction. The aim of this thesis is to describe and compare the common optimization methods and to create a software capable of solving them. Another objective is to observe how much the data acquisition can be accelarated without the loss of image quality when dealing with real data. The most promising method in the experiment was total generalized variation (TGV) regularization which was able to reconstruct an image with a proper quality using only a quarter of the data.
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Attacking biometric hashing via optimization techniques
Mlčáková, Kristýna ; Mokrý, Ondřej (referee) ; Rajmic, Pavel (advisor)
The thesis deals with biometric hashing, which is a two-factor authentication method that combines a secret key with biometric data in order to create a secure biomeric template for authentication purposes. The thesis first discusses the theoretical aspects of this issue and then focuses on the implementation of this concept. The paper also describes attacks on biometric hashing systems that are subsequently implemented. Practically performed attacks are based on the assumption that the attacker knows the user’s secret key and biohashes stored in the database. Two methods of attacks are applied. These methods are able to reconstruct the biometric data of an authorized user and related biohashes. Methods are based on 1-bit compressive sensing approach. The aim of the thesis is to evaluate the effectivity of the attacks on biometric hashing systems and to make a conclusion about the security of such systems.
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Clean photo out of corrupted videosequence
Berky, Martin ; Záviška, Pavel (referee) ; Rajmic, Pavel (advisor)
This diploma thesis deals with separation of moving objects from static unchanging background in video sequence. Thesis contains description of common method of separation and approach based sparse signal representation. In the practical part of thesis, there were created video sequences, which are used to verify designed algorithm implemented in Matlab interface, disegned to obtain separated background from damaged video frames.
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