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Searching adenine and guanine rich regions
Vlachynská, Alžběta ; Provazník, Ivo (referee) ; Maděránková, Denisa (advisor)
This work deals with searching adenine and guanine rich regions. Their finding which determines the randomness and functionality may lead to better understanding genetic data storage in DNA sequences. The first part of the work describes the chemical composition and structure of DNA, its replication, transcription and translation. It contains the basic information about the genome. The next chapter deals with numerical representation of DNA sequences, necessary for a computer processing. Nucleotide density is a method suitable for searching adenine and guanine rich regions. The practical part of the work is an application designed and implmented in MATLAB environment. The last part is the analysis of human, chimpanzee and mice genes.
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Hodnocení genetické diverzity genových zdrojů rostlin, programy, modely, využití
Oshea, Denisa
The bachelor thesis is a literature review on the topic of genetic diversity evaluation. The beginning is devoted to genetic diversity in general terms, its importance, its history, and its loss, that is irrecoverable and is regarded by many as the most important environmental problem. In addition, its protection, which is very important and in the Czech Republic is secured by the National program for conservation and utilization of plant genetic resources. The work also describes the methods of evaluation from morphological, through biochemical to molecular. There are described and compared mainly molecular methods such as RAPD, AFLP, RT-PCR, and others. The last part is devoted to a description of some plant genomes databases. One of them is for example The European Vitis Database.
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Searching adenine and guanine rich regions
Vlachynská, Alžběta ; Provazník, Ivo (referee) ; Maděránková, Denisa (advisor)
This work deals with searching adenine and guanine rich regions. Their finding which determines the randomness and functionality may lead to better understanding genetic data storage in DNA sequences. The first part of the work describes the chemical composition and structure of DNA, its replication, transcription and translation. It contains the basic information about the genome. The next chapter deals with numerical representation of DNA sequences, necessary for a computer processing. Nucleotide density is a method suitable for searching adenine and guanine rich regions. The practical part of the work is an application designed and implmented in MATLAB environment. The last part is the analysis of human, chimpanzee and mice genes.
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