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Study of membrane transport processes in yeast using potentiometric fluorescent porbe diS-C3(3)
Bartl, Tomáš ; Gášková, Dana (advisor) ; Krůšek, Jan (referee)
1 Title: Study of membrane transport processes in yeast using potentiometric fluorescent probe diS-C3(3) Author: Tomáš Bartl Department: Institute of Physics of Charles University Supervisor: doc. RNDr. Dana Gášková, CSc., Institute of Physics of Charles University Abstract: Yeast membranes contain a number of transporters. Some are responsible for flow of nutrients to the inside of the cell, others for disposing of waste and foreign substances and some for transport of small ions or protons across the membrane. The focus of this work is on the activity of specific transport membrane proteins, so-called MDR pumps, which are responsible for transport of foreign substances or drugs, out of the cell. Using the series of mutant strains of the yeast Saccharomyces cerevisiae (AD1-3, AD1-8 and AD12) differentiated in the presence of specific MDR pumps in their membrane, an influence of various chemical substances on the intracellular concentration of the potentiometric fluorescent probe diS-C3(3), which is actively being transported out of the cell by some of the MDR pumps, was observed. By the examination of the effect of 2-deoxyglucose we proved the active contribution of not only the main MDR pump, Pdr5p, but also of some other pumps, in lowering the intracellular probe concentration. It was observed that...
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Calcium homeostasis and modulation of nociceptive synaptic transmission
Sojka, David ; Paleček, Jiří (advisor) ; Žurmanová, Jitka (referee) ; Krůšek, Jan (referee)
2 SUMMARY OF THE THESIS This study was designed to improve our knowledge regarding mechanisms of nociceptive signaling at spinal cord level. One of the forms of spinal cord synaptic transmission modulation is central sensitization, a manifestation of synaptic plasticity at spinal cord level, which was found to be present at many chronic pain syndromes. This study deals mainly with a development of calcium imaging technique with a final goal to study mechanisms of central sensitization in vitro on population of dorsal horn neurons. We have analyzed synaptically evoked intracellular Ca changes as a result of dorsal root stimulation in a superficial dorsal horn area in spinal cord slices and found two types of Ca responses: one synchronized with electrical stimulation and a second one, delayed response due to Ca release from internal stores. The delayed Ca release was not previously shown to be present in these neurons and it was not dependent on activation of ionotropic glutamatergic receptors, suggesting involvement of metabotropic receptor pathway. The presence of this delayed type of Ca response could have a significant role in the induction of some types of chronic pain syndromes since intracellular calcium increase is thought to be a key trigger point in spinal cord neurons sensitization. An important...
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Study of factors influencing the function of MntH, membrane transport protein of E. coli
Jurková, Ingrid ; Urbánková, Eva (advisor) ; Krůšek, Jan (referee)
MntH belongs to the Nramp family of transport proteins, and plays an important role not only in homeostasis of iron and manganese, but also in bacterial defence against the immunity response of an infected host cell. MntH co-transports divalent metal ions into the cell together with protons with a stoichiometry dependent on the membrane potential and extracellular pH. Using the redistribution potential dye diS-C3(3), we measured the effects of MNTH expression and MntH-mediated metal transport on the cell membrane potential and intracellular pH. Cells expressing MNTH were found to be hyperpolarised and their membrane potential was depolarised upon the addition of metal ions. In the theoretical part of our work, we explored general four-, six-, and eight-state carrier models that were modified by introducing the voltage dependence of all rate constants. Using mathematical modelling, we simulated the effect of various model parameters (including membrane potential, substrate concentration, and carrier or substrate charge) on substrate influx. We observed some of the transport characteristics described for MntH proteins such as variable symport stoichiometry that is influenced by the membrane potential and pH. However, for a more detailed simulation of the eight-state carrier model, more information about...
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Analysis of the arrangement of the binding pocket of the MDR pump Cdr1p of the pathogenic yeast Candida albicans - a major contributor to clinical drug resistance.
Bartl, Tomáš ; Gášková, Dana (advisor) ; Krůšek, Jan (referee)
Title: Analysis of the arrangement of the binding pocket of the MDR pump Cdr1p of the pathogenic yeast Candida albicans - a major contributor to clinical drug resistance. Author: Tomáš Bartl Department: Institute of Physics of Charles University Supervisor: doc. RNDr. Dana Gášková, CSc., Institute of Physics of Charles University Abstract: Candida infections are becoming an increasing cause of death in hospitalized patients. The main reason for drug resistance in the most common yeast pathogen Candida albicans is an increased production of transport proteins, which are removing the drug from the cell cytosol and thus producing the phenomenon called multidrug resistance - MDR. The goal of this thesis was to verify the suitability of the yeast strain Saccharomyces cerevisiae with heterologously expressed MDR pumps from the pathogenic yeast Candida albicans and comparison to the results from C. albicans with homologous expression. The results that the azole drugs miconazole, bifonazole, and ketoconazole, together with potentiometric fluorescent probe diS-C3(3), are substrates of the CaCdr1p and CaCdr2p pumps, but not, or minimally, of the pump CaMdr1p, are consistent with the previously published work. The binding pocket of CaCdr1p was explored using the disc diffusion assay and the diS-C3(3) fluorescent probe...
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Functional characterization of MDR pump Pdr5p responsible for multiple drug resistance in yeast Saccharomyces cerevisiae
Sayedová, Shirin ; Gášková, Dana (advisor) ; Krůšek, Jan (referee)
One of the main reasons for the treatment failure of infections caused by pathogenic microorganisms is the overexpressing of efflux membrane proteins, which actively remove drugs from cells, leading to a phenomenon called multidrug resistance MDR. In this work, we focused on the functional characterization of the MDR pump Pdr5p in the yeast Saccharomyces cerevisiae. We have verified that diS-C3(3) fluorescence method can be used to determine the binding sites where the substrates bind in the binding pocket of the pump ScPdr5p. We focused on the study of the ScPdr5p binding pocket using triazole derivatives: ravuconazole, voriconazole and fluconazole. Using disc diffusion assay, we showed that all three studied triazoles are substrates of the pump ScPdr5p. We have found that these structural analogs have a significantly different effect on the inhibition of the potentiometric fluorescent probe diS-C3(3) transport by the pump ScPdr5p, and also that ravuconazole and voriconazole compete with each other for transport by the pump ScPdr5p. We have used a fluorescent approach to study the binding of azoles to the binding pocket of pump ScPdr5p using benchmark substrates, that bind selectively to only one binding site in the binding pocket of the pump ScPdr5p, and we have supported the hypothesis that ravuconazole...
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Studies on molecular interactions of the mu-opioid and TRPV1 receptors
Melkes, Barbora ; Novotný, Jiří (advisor) ; Blahoš, Jaroslav (referee) ; Krůšek, Jan (referee)
In this work, we investigated the behavior of the -opioid receptor (MOR) and the transient receptor potential vanilloid 1 (TRPV1) ion channel in the plasma membrane and their mutual communication. Both these receptors are implicated in pain perception and analgesia. We observed that the lateral mobility of MOR was strongly affected by different biased opioid agonists. DAMGO and endomorphin-2 display opposite bias towards MOR. According to our results, they also have the opposite effects on the mobility of MOR. Morphine induced only small changes in the mobility of MOR. Moreover, cholesterol depletion and blockage of G protein signaling by pertussis toxin (PTX) affected the ability of different MOR agonists to alter MOR mobility in a unique manner. The effects of DAMGO and endomorphin-2 were compromised under these conditions. On the other hand, we observed increased movement of MOR after the addition of morphine. PTX alone did not affect receptor movement, but it completely disrupted the effect of cholesterol depletion on morphine induced changes the mobility of MOR. Next we studied the mobility of TRPV1. The TRPV1 agonist capsaicin changed the lateral mobility of TRPV1. Surprisingly, after adding the MOR antagonist naloxone, the apparent diffusion coefficient of TRPV1 but to a lower extent than...
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Neuroinflammation and mechanisms of neuropathic pain development
Kalynovska, Nataliia ; Paleček, Jiří (advisor) ; Krůšek, Jan (referee) ; Hejnová, Lucie (referee)
Neuropathic pain represents a possible outcome of neural tissue injury; it occurs also as a concomitant symptom of different diseases or as a side effect of several treatments. Up to date, it constitutes a great challenge in clinical practice, as currently available treatments are still unsatisfactory. Mechanism-based treatment approaches are promising strategy in neuropathic pain management. However, there is still a lack of information about the exact mechanisms involved in the development and/or maintenance of neuropathic pain. This Doctoral Thesis is aimed to explore the mechanisms underlying the development of neuropathic pain states in different models. The principal part of this work is focused on the study of anti-inflammatory effect of Angiotensin II receptor type 1 (AT1R) blocker, losartan, in two different models of peripheral neuropathy: paclitaxel-induced peripheral neuropathy (PIPN) and spinal nerve ligation (SNL). The work also aimed to access the involvement of spinal transient receptor potential vanilloid type 1 (TRPV1) channels in the process of neuronal activation induced by paclitaxel (PAC) and chemokine CCL2 treatment. In order to fulfil the abovementioned aims, behavioral, immunohistochemical and molecular methods were used. For every model of peripheral neuropathy, the...
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Study of the differences in the architecture of the binding pockets of two major MDR pumps of yeast Saccharomyces cerevisiae, Pdr5p and Snq2p, using their common substrates
Backová, Lenka ; Gášková, Dana (advisor) ; Krůšek, Jan (referee)
Multidrug resistance (MDR) is responsible for the decrease in drug effectiveness on pathogenic microorganisms or tumours. One of the mechanisms of multidrug resistance is drug transport out of the cell (efflux) by membrane transporters - pumps. Main MDR pumps of a yeast species Saccharomyces cerevisiae are Pdr5p and Snq2p, who share high amino acid sequence identity. This thesis focuses on the differences of these pumps, their binding pockets and their arrangement. The binding pocket of Pdr5p is better researched and comparing the results with those of pump Snq2p leads to broader knowledge about the binding pocket of Snq2p. We use disc diffusion assay to determine common substrates of both pumps, ketoconazole and bifonazole. These substrates are used in potentiometric fluorescent probe diS-C3(3) assay. Results of these experiments lead us to the findings that the binding pocket of Snq2p has multiple binding sites. Binding pockets of pump Pdr5p and Snq2p differ in binding sites and their conformation. However, the conformation of both pumps is dynamic, which has been shown after the addition of glucose to supply the pumps with energy. 1
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