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The study of the association behavior of the amphiphilic copolymers in solutions containing low molar compounds by means of computer simulations.
Šindelka, Karel ; Limpouchová, Zuzana (advisor) ; Slavíček, Petr (referee) ; Vondrášek, Jiří (referee)
Title: The study of the association behaviour of the amphiphilic copolymers in solutions containing low molar compounds by means of computer simulations. Author: Mgr. Karel Šindelka Department: Faculty of Science, Charles University Supervisor: Doc. Ing. Zuzana Limpouchová, Csc. Abstract This doctoral thesis focuses on the study of electrostatic self- and co-assembly in complex polymer solutions containing polyelectrolyte (PE) block copolymers together with surfactants, neutral homopolymers, or oppositely charged PEs using the dissipative particle dynamics (DPD). It was shown that the electro- static self-assembly depends not only on the cooperative interactions of oppo- sitely charged PE chains, but also on the amphiphilicity of PE species or on the polymer block compatibility, among other properties. PEs with incompatible blocks create well-defined core-shell structures, while large ill-defined crew-cut aggregates form from PEs with compatible blocks In non-stoichiometric mixtures of PEs with incompatible blocks, co-assembled nanoparticles are smaller than in stoichiometric mixtures and are charged. The destabilization of larger aggregates depends on how the PE charge surplus is introduced: the effect is strongest when the density of the surplus PE charge on the PE chains is increased and weakest when the...
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Atelocollagen processing, gelation and characterization
Zubal, Lukáš ; Podzimek,, Štěpán (referee) ; Migliaresi, Claudio (referee) ; Vojtová, Lucy (advisor)
Předkládaná disertační práce se zabývá charakterizací, zpracováním a gelací rozpustného kolagenu. Literární rešerše shrnuje postavení kolagenu na trhu s transplantáty, jeho aplikace a jednotlivé typy kolagenu. Detailně jsou rozebrány jednotlivé metody charakterizace rozpustného kolagenu a způsoby jeho gelace. Experimentální část je rozdělena na dvě podkapitoly. První podkapitola experimentální části se zabývá rozpouštěním a gelací rozpustného kolagenu v natlakované CO2 atmosféře. Proti jiným podobným metodám, metoda pracuje na poměrně nízkém tlaku (do 0.9MPa) a je bezpečná z pohledu denaturace kolagenu neboť funguje za nízké teploty blízké 0°C. Tímto způsobem mohou být průhledné gely, obsahující velmi tenká vlákna kolagenu, vytvořeny mnohem rychleji než za použití konvenčních metod. Rychlost gelace a transparentnost dává konceptu potenciál v oblasti oftalmologie a měla by přinést podstatné výhody pro injektovatelné produkty, vytváření mikro kuliček a 3D tisk. Druhá část popisuje unikátní charakterizaci rozpustného kolagenu v nativním stavu pomocí metody průtokové frakcionace s víceúhlovým rozptylem světla (AF4-MALS). Získaná molekulová hmotnost (při nejvyšší detekované koncentraci) odpovídá předpovězené hmotnosti a nativní i denaturovaný kolagen lze snadno rozeznat v konformačním grafu. Tato nová metoda poskytuje konzistentní a stabilní výsledky ve srovnání s ostatními zavedenými metodami. Metoda může být použita pro optimalizaci kvality výtěžků během výroby rozpustného kolagenu, nebo pro citlivou detekci denaturace během zpracování kolagenu.
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2-Oxazoline triblock copolymers with hydrophilic, lipophilic and fluorophilic blocks: from synthesis to hierarchical self-assembly
Kaberov, Leonid ; Štěpánek, Petr (advisor) ; Černoch, Peter (referee) ; Schlaad, Helmut (referee)
DOCTORAL THESIS ABSTRACT 2-Oxazoline triblock copolymers with hydrophilic, lipophilic and fluorophilic blocks: from synthesis to hierarchical self-assembly MSc. Leonid Kaberov The focus of this research was on the study of di- and triblock poly(2-oxazoline) copolymers with fluorinated blocks. The synthesis and solution properties of novel copolymers combining hydrophilic, hydrophobic (lipophilic) and fluorophilic moieties into one segmented molecule were reported. The simple synthetic approach which provides an easy way to attach a CnF2n+1 terminal chain to a poly(2-methyl-2-oxazoline)-block-poly(2-n-octyl-2-oxazoline) copolymer was described. Small-angle neutron and x-ray scattering experiments unambiguously proved the existence of polymersomes, worm-like micelles and their aggregates in aqueous solution. It was shown that increasing content of fluorine in the poly(2-oxazoline) copolymers results in a morphological transition from bilayered or multi-layered vesicles to worm-like micelles. The synthesis of poly(2-perfluoroalkyl-2-oxazoline)s is complicated by their extremely low activity in cationic ring-opening polymerization reaction (CROP), both in the initiation and in the propagation due to strong electron-withdrawing effect of perfluoroalkyl substituent. A detailed systematic study on synthetic...
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Influence of Si surface passivation on growth and ordering of nanostructures
Matvija, Peter ; Kocán, Pavel (advisor) ; Rezek, Bohuslav (referee) ; de la Torre, Bruno (referee)
Silicon is currently the most widely used semiconductor material with applications ranging from solar cells and sensors to electronic devices. Surface functionalization of silicon with molecular monolayers can be used to tune properties of the material toward a desired application. However, site-specific adsorption of molecules or molecular patterning on silicon surfaces is a difficult task due to the high reactivity of silicon. In this work, we use scanning tunneling microscopy, ab-initio calculations and kinetic Monte Carlo simulations to study adsorption of organic molecules on a bare and thallium-passivated Si(111) surface. We show that the polarity of molecules has a large impact on bonding of the molecules with the bare surface. We demonstrate that, in comparison with the bare surface, molecules or single-atom adsorbates deposited on the Tl-passivated surface have significantly higher mobility. The increased mobility induces formation of 2D gases on the surface and enables formation of self-assembled molecular structures. We propose a novel method to directly visualize the 2D surface gases and we show that a phase of surface gases containing molecule-bound dipoles can be controlled by a non-homogeneous electric field. 1
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Nanoparticles formed by complexes of copolymers with low-molar-mass compounds
Vojtová, Jana ; Štěpánek, Miroslav (advisor) ; Filippov, Sergej (referee) ; Hoffmann, Ingo (referee)
This thesis is focused on mixed systems of various copolymers (double hydrophilic block and gradient polyelectrolytes, hydrophobic graft copolymers) and low-molar-mass compounds (sodium dodecyl sulfate as a representative of a ionic surfactant or superparamagnetic iron oxides in the form of nanocrystals). The electrostatic and hydrophobic interactions in the studied systems in aqueous solutions leading to aggregation behavior and to the formation of co-assembled nanoparticles were investigated by combination of scattering and microscopy techniques, including light, X-ray and neutron scattering, electron microscopy and atomic force microscopy. Powered by TCPDF (www.tcpdf.org)
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The D-A and pi-pi interactions and their use in self-assembly
Rejchrtová, Blanka ; Starý, Ivo (advisor) ; Kotora, Martin (referee)
The D-A and π-π Interactions and Their Use in Self-Assembly Due to their well-defined shape, size and properties gold nanoparticles represent an advantageous platform for the study of non-covalent interactions between ligands anchored to their surface both in solution and in monolayers or thin films. The aim of this thesis was the synthesis of ligands for gold nanoparticles bearing an anchoring group at one end and a planar π-electron rich pyrene unit at the other. Six structurally variable ligands were prepared differing in the pyrene substitution pattern and the spacer between the aromatic part and the acetylated thiol function. Furthermore, a synthetic pathway leading to extended π-electron systems (both electron rich and electron poor) such as hexabenzocoronene derivatives and its fragments was explored. The key steps in the synthesis of these compounds are the cyclization reactions of alkynes leading to polycyclic intermediates and their ensuing cyclodehydrogenation (Scholl reaction). All of the prepared ligands and their intermediates were characterized by spectroscopic methods. The structure of the key hexakis(pentafluorosulfanyl-phenyl)benzene was confirmed by single crystal X-ray crystallography. The prepared ligands bearing a pyrene unit were deacetylated and anchored to the surface of...
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Self-Assembly in Mixture of Surfactants and Stimuli-Responsive Polymers with Complex Architecture
Bogomolova, Anna ; Filippov, Sergej (advisor) ; Štěpánek, Miroslav (referee) ; Hanyková, Lenka (referee)
Title: Self-assembly in mixture of surfactants and stimuli-responsive polymers with complex architecture Author: Anna Bogomolova Department: Physical and Macromolecular Chemistry Supervisor: PhD. Sergey K. Filippov, IMC AS CR, v.v.i. Supervisor's e-mail address: filippov@imc.cas.cz Abstract: The issue of construction of complex multi-block copolymers is currently one of the most researched areas. It became a logic consequence of the continuous development in polymer chemistry. Nowadays, a great interest is attracted to multi- responsive block copolymers. As a rule, they consist of hydrophilic, hydrophobic and responsive blocks. That responsive block can be either thermo-sensitive or pH-sensitive as well as sensitive to some other external stimuli. In the present work, we will try to cover topic of stimuli-responsive block copolymers and their interactions with different types of surfactants. Understanding of polymer/surfactant interactions can be a crucial step for future modeling of drug/polymer or protein(DNA)/surfactant interactions. There is a great interest in the investigation of polymer-surfactant interactions. However, while the homopolymer-surfactant interactions are characterized well enough, the same interactions for block copolymers are poorly described. The main development in the latter topic...
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Study of light-harvesting antennae based on bacteriochlorophyll aggregates
Alster, Jan ; Pšenčík, Jakub (advisor) ; Fidler, Vlastimil (referee) ; Balaban, Teodor Silviu (referee)
Title: Study of light-harvesting antennae based on bacteriolorophyll aggregates Author: Jan Alster Department: Department of Chemical Physics and Optics Supervisor of the doctoral thesis: doc. RNDr. Jakub Pšenčík, Ph.D. Abstract: Artificial photosynthesis is a potential future source of renewable energy. e light-to-emical energy conversion process starts with capturing light. Chlorosomes of green phototropic bacteria are probably the most efficient light-harvesting antenna found in the Nature. Moreover, their unique structure based on a self-organised ag- gregate of pigment molecules makes them relatively easy to mimic in vitro. is work explores formation and properties of self-assembled aggregates of bacteriolorophyll molecules in aqueous solvents by means of steady state and time resolved optical spec- troscopy with time resolution in the microsecond to femtosecond range. Various ag- gregation inducing agents have been tested. Isoprenoid quinones introduce a redox- dependent excitation energy quening meanism into the bacteriolorophyll aggre- gates. Carotenoids enhance the light-harvesting properties of the aggregates by cap- turing light in the spectral region where bacteriolorophyll does not and transferring the excitation energy to bacteriolorophyll. e results indicate that self-assembled...
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The study of self-assembly governed by the formation of donor-acceptor complexes
Warzecha, Tomáš ; Starý, Ivo (advisor) ; Betík, Robert (referee)
The study of self-assembly governed by the formation of donor-acceptor complexes This work deals with the preparation of 2-[(3-carboxyphenyl)ethynyl]benzoic acid, which a represents simplified model of monodisperse (p-phenylen)ethynylene oligomers, functionalized by carboxylic groups. Such a dicarboxylic acid was synthesized via Sonogashira coupling and then taken over to a series of diesters with corresponding alcohols. The theoretical part contains concise introduction to nanoscience, self assembly and donor - acceptor (D-A) interactions. The most frequently used synthetic reactions - Sonogashira coupling and Steglich esterification are described. The experimental part deals with the preparation of dimeric dicarboxylic acid and corresponding esters with alcohols containing electronacceptor functional groups. The synthetized compounds were characterized by spectroscopic methods (NMR, MS, IR, UV/VIS) and elemental composition established by HR MS. Melting points were measured for crystalline compounds.
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Computer simulations of conformational behavior of block copolymers in selective solvents
Šindelka, Karel ; Limpouchová, Zuzana (advisor) ; Kuldová, Jitka (referee)
The presented bachelor thesis deals with the study of the conformational be- haviour of diblock copolymers in the selective solvent. The polymer solution was modelled using a coarse-grained model and is simulated using dissipative particle dynamics (DPD). An original C-code for DPD simulations together with a new software package for processing of simulation data was developed. Functionality of the code and software were tested for two systems. The first system corre- sponded to a linear homopolymer in a solvent and the scaling laws for homopoly- mer in dilute solution were reproduced. The second system represented diblock copolymers in selective solvents and micellar behaviour simulated with the de- veloped code agreed with simulations by Sheng et al. Then, the self-assembly of long copolymer chains in selective solvents that mimics a block copolymer of poly(methacrylic acid) and poly(ethylene oxide) in aqueous solution at pH 1 was studied for different polymer concentrations. The simulation results provided valuable insight into the studied system and serve as a good starting point for DPD simulations of this system with added surfactants and at different values of pH, where the electrostatic interactions become important.
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