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Applications of capillary electrophoresis in life sciences
Křížek, Tomáš ; Coufal, Pavel (advisor) ; Pacáková, Věra (referee) ; Tůma, Petr (referee)
Tomáš Křížek: Applications of Capillary Electrophoresis in Life Sciences (Dissertation thesis) ABSTRACT This thesis is focused on the applications of capillary electrophoresis in two important areas of life sciences, proteomics and enzyme assays. In the first part, Pluronic F-127 copolymer was studied as a sieving matrix for proteomic applications of capillary gel electrophoresis. The effect of thermoassociation of Pluronic F-127 on the separation selectivity was investigated and no difference in selectivity of the separation below, inside and above the thermoassociation temperature region was observed. The performance of Pluronic F-127 in capillary gel electrophoresis was compared with dextran as a commonly used sieving matrix. The results showed, that Pluronic F-127 offers superior performance for low-molecular-mass proteins because it provides higher separation power than dextran with significantly lower viscosity of the background electrolyte. The lower viscosity makes the polymer easier to replace after each analysis, which leads to remarkably higher repeatability of the experiments. On the other hand, dextran, due to its higher viscosity, was shown to be more convenient for separations of protein digests, where extremely high separation efficiency is required. The second part focuses on...
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Enantioselective separation systems in capillary electrophoresis
Svobodová, Jana ; Gaš, Bohuslav (advisor) ; Foret, František (referee) ; Kenndler, Ernst (referee)
Chiral separation systems in capillary electrophoresis are in the scope of interest of many research groups all over the world. Therefore, the need to develop reliable theoretical models, which would help to explain phenomena connected with chiral separations or optimization of separation conditions, is obvious. In this thesis several mathematical models and approaches that can fulfill these requirements are presented. First part of the thesis deals with the determination of rate constants of interconversion of enantiomers by means of dynamic capillary electrophoresis. We focused on mixtures of chiral selectors and formulated a mathematical model, which enables to determine rate constants of interconversion in such systems. Mixtures of chiral selectors are very popular in separation practice due to their enhanced enantioselectivity. The theoretical model established in the thesis is able to explain the separation mechanisms of multi-chiral selector systems and to propose and verify possible ways of their optimization. In addition, the separation mechanism in systems with simultaneous cyclodextrin and borate complexation was revealed. Finally we present the complete mathematical model of electromigration in systems with complexation agents. The model is implemented into our simulation tool Simul 5...
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Separation and determination of possible products of enzymatic cleavage of 4-nitrophenyl-N,N'-diacetyl-β-D-chitobioside using capillary electrophoresis
Velvarská, Romana ; Křížek, Tomáš (advisor) ; Kalíková, Květa (referee)
This work deals with the development and optimization of conditions of a method that can be used to compare the activity of the enzyme β-N-acetylhexosaminidase in hydrolysis of a natural substrate and a chromogenic substrate, which is often used in the study of enzyme kinetics. As a substrate, 4-nitrophenyl-N,N'-diacetyl-β-D-chitobioside was selected for cleavage. This oligosaccharide contains bond, which the enzyme cleaves in the natural substrate, and the bond that occurs in the chromogenic substrate. To determine the products arising from enzymatic hydrolysis of 4-nitrophenyl-N,N'-diacetyl-β-D-chitobioside, capillary zone electrophoresis was used. First, it was necessary to find the optimal composition of the electrolyte, its pH and concentration. The optimal background electrolyte was a solution of sodium tetraborate at a concentration of 25 mmol/l and a pH of 10.25. Subsequently, repeatability, calibration curves and linearity, limit of detection and limit of quantification were investigated. Repeatability of migration times ranged up to 0.6%, the repeatability of peak areas between 2.5 and 6.3%. Limits of detection were ranging from 0.005 to 0.120 mmol/l. Finally, the optimized method was successfully used to monitor the actual enzyme cleavage.
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Application of Capillary Electrophoresis in Forensic Molecular Genetic Investigation
Grafnetterová, Anna ; Doubková, Klára (advisor) ; Coufalová, Pavla (referee)
5 Abstract The capillary electrophoresis (CE) is an analytical method based on the principle of the traditional plate electrophoresis. Modern ways of fluorescence marking and the detection result in the higher reliability of analyses as well as in more precise results. The utilization of this method is wide within a lot of science fields. In special cases this method can even replace methods used so far, i.e. HPLC. The CE is mainly used in the forensic investigation in particular for person identification based on the DNA analysis of the even minimal sample amount. The STR analysis is an example of such examination. It uses short tandem repeats with high variability within the population. Commercial companies e.g. Promega Corporation, Applied Biosystems etc., develop corresponding instrumentation, software and kits which are important for receiving correct data. As a final result it is obtained DNA profile evaluated by comparison of samples from the "crime scene" with the reference samples. Besides the using in the human domain the DNA profiles are often used in the veterinary practice, in animal (cats, dogs, horses, cattle etc.) raising or breeding, for improving the particular characteristics. Key words: capillary electrophoresis fluorescent labeling STR STR analysis DNA profil
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Development of capillary electrophoretic method for determination of phosphorylated components of bacterial cell membranes
Červinková, Jana ; Čabala, Radomír (advisor) ; Coufal, Pavel (referee)
Title: Development of capillary electrophoretic method for determination of phosphorylated components of bacterial cell membranes Author: Jana Červinková Department: Department of analytical chemistry Supervisor: RNDr. Radomír Čabala, Dr. Abstract: The bachelor work reviews the present state of knowledge of the analyses and determination of phosphorylated compounds present in the bacterial cell membranes. This group of compounds is represented mainly by phosphatidylglycerol, cardiolipine, and phosphatidylethanolamine and minority phosphatidylserine, phosphatidic acid and lysylphospatidylglycerol. Together with fatty acids these substances are the main components of cell membranes and they could be, to a certain degree, applied to either identification of bacteria or the study of bacterial behaviour at different conditions. Partially or fully non-aqueous capillary electrophoresis analytical method with spectrophotometric detection would be developed for their determination. Optimum experimental conditions for the separation of standards of selected compounds should be found within the framework of the bachelor thesis. Keywords: phosphorylated compounds, bacterial cytoplasmic membrane, capillary electrophoresis, thin layer chromatography, Bacillus subtilis.
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Electrophoresis in short capillaries
Podhorná, Petra ; Opekar, František (advisor) ; Samcová, Eva (referee)
The laboratory-made apparatus for electrophoretic separations in short capillaries has been tested. The basic functions of the apparatus (separation efficiency, resolution, migration time) have been tested using mixture of K+ and Na+ ions. The model mixture of basic amino-acids (arginine, lysine, histidine and its derivatives, 3-methylhistidine and 1-methylhistidine) has also been separated and detected using contactless conductometric detector. Histidine in real sample of urine has also been determined. Keywords: capillary electrophoresis, short capillary, alkaline aminoacids
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Study of β-N-acetylhexosaminidase in tobacco plants
Valenta, Robert ; Tichá, Marie (referee) ; Ryšlavá, Helena (advisor)
β-N-acetylhexosaminidases are ubiquitous in all living organisms, but there is little information about these enzymes in plants, especially in leaves. Suggested functions of plant β-N-acetylhexosaminidases are participation in defence responses against fungal and other pathogens and also in degradation of storage glycoproteins. β-N-acetylhexosaminidase from tobacco leaves (Nicotiana tabacum L.) was purified to final specific activity 190 nmol min-1 mg-1 with p-NP-GlcNAc as substrate. Precipitation by ammonium sulphate, gel filtration chromatography on Sephacryl S-300 column and affinity chromatography on Con A- Sepharose column were used. Michaelis constant and maximal reaction rate of β-N- acetylhexosaminidases determined for p-NP-GlcNAc was 0.33 mM and 414 nmol min-1 mg-1 , respectively. The cleavage of diacetylchitobiose catalyzed by β-N-acetylhexosaminidase was studied using capillary electrophoresis. Determined activity of β-N-acetylhexosaminidase for diacetylchitobiose was more than 10-times lower compared to β-N-acetylhexosaminidase activity for p-NP-GlcNAc. These results indicate that chitobiose and probably other chitooligomers are not natural substrates of β-N-acetylhexosaminidase and thus this enzyme is most likely not involved in protection against fungal pathogens. Natural substrate...
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Quantum dots and their interaction with biomolecules
Stanisavljević, Maja
In this study CdTe QDs were synthetized via microwave irradiation method. Further they have been modified for purposes of their interaction with biomolecules using different conjugation approaches. Applied conjugation chemistries were non-specific interaction, streptavidin-biotin affinity. Glutathione modified CdTe QDs of 2 nm size were capable of non-specific interaction with major groove of DNA, while streptavidin modified CdTe QDs served as specific linker for biotinylated oligonucleotides. Further, streptavidin-biotin interaction was used for coupling of apoferritin and magnetic nanoparticles.
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On-chip and capillary electrophoresis for cancer research
Hájková, Tereza ; Babula, Petr (referee) ; Provazník, Ivo (advisor)
The thesis deals with cancer disease and its genesis. The prostate cancer is the second most dangerous disease in male population. It is very important to detect it in early stage. This thesis deals with the proteins which are or could be used as potential cancer markers. For example in current commonly used the prostate-specific antigen and newly the metallothionein. Metallothionein is a protein occuring in fauna and flora in four basic isoforms. There is a hypothesis that the isoform content or/and their ratio may have a diagnostic implication and could be used in clinical practise. For this reason they are studied and developed methods for specific and sensitive analysis of individual isoforms. In this work, capillary electrophoresis is used for the separation of the isoforms. The influence of the parameters such as type of background electrolyte, its pH and separation voltage etc. on the final separation are discussed.
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