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Measurement of diffusion coefitients by use of magnetic resonance
Král, Jakub ; Gescheidtová, Eva (referee) ; Bartušek, Karel (advisor)
This Bachelor thesis is focused on imaging techniques based on the principles of nuclear-magnetic resonance. These techniques are one of the most modern studies of physical, chemical and biological properties of substances. Introduction of this work is focused primarily on physical principles. Further in this work attention is given to the method of the PFG-SE but also to more modern multiinterval NMR methods, which removes the systematic measurement errors for heterogeneous materials. Part of the work is also devoted to b-factor calculations for various kinds of pulse sequences. In last part the work is devoted to data processing in Matlab and Marevisi. Selected method from the beginning of the work is than used to measure the diffusion and processing of tissue cultures.
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Filtering methods for NMR measurements
Nezhyba, Jiří ; Mikulka, Jan (referee) ; Gescheidtová, Eva (advisor)
This master’s thesis deals with the wavelet transform and its use in processing and removing noise from images acquired by nuclear magnetic resonance. It defines fundamental terms for this work as mother wavelet or thresholding. Above all, it describes the principle of wavelet transform, thresholding techniques and criteria for evaluating the effectiveness of filtration. It describes the relation between wavelet transforms and digital filter banks. The experimental section describes the designed filtering method for removing noise from an image captured by the technique of nuclear magnetic resonance. We applied to different kinds of mother wavelets. Evaluation of the effectiveness of filtering was performed using the signal to noise ratio, relative contrast and the steepness of the intensity changes in signal intensity. It also discusses the comparison of properties of the image and selecting the mother wavelets based on image characteristics. Images were compared in terms of a histogram, cumulative histogram, k-space and the difference image.
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MR image processing
Mrákava, Petr ; Smékal, Zdeněk (referee) ; Gescheidtová, Eva (advisor)
The subject of this bachelor's thesis is to become familiar with the methods of processing image acquired by techniques of nuclear magnetic resonance. It describes the gradual steps in the digitizing of the signal to the image data. But in the process a disturbing component is almost always created in the image, in particular noise, which causes image devaluation. Therefore, further work is focused mainly on eliminating present disturbing components. For the noise elimination, the widely used wavelet transformation is applied, which is implemented by banks of digital filters. The experimental part of this work deals with design of MR filtering method, optimal filtering parameters setting, decomposition of images into magnetic field map, and subsequent comparison of results obtained.
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Fast MRI methods
Kořínek, Radim ; Gescheidtová, Eva (referee) ; Bartušek, Karel (advisor)
This thesis deals with comparison of rapid and conventional methods used in MRI (Magnetic Resonance Imaging). There is a description of imaging methods such as EPI (Echo Planar Imaging), Ultra-fast GRE, FSE (Fast spin echo) as well as a snapshot-FLASH and FISP (Fast Imaging with Steady Precession). Experimental part of this thesis deals with the rapid FSE (Fast Spin Echo) method. Especially is explained and assembled an algorithm for proper compilation of data from the FSE method. This algorithm allows us to evaluate the images from the FSE method. This method is examined in detail (in terms of impact parameters) and compared with traditional conventional methods. Finally, the individual images are evaluated, and the best parameters for FSE method are identified.
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Optimization of MR acquisition parameters for the measurement of small objects
Pecháček, Libor ; Přinosil, Jiří (referee) ; Gescheidtová, Eva (advisor)
The subject of my thesis is a design of the methods optimizing, the acquisition of MR signals when small objects measure. The thesis is divided into several parts in order to give a deeper knowledge of the problem. The first part focuses on the theory associated with NMR (Nuclear Magnetic Resonance) and SNR (signal-to-noise ratio). The practical verification of the theory follows. The conclusion of this work is focused on MR images filtering by use of wavelet transform to suppress a noise in the image. The method optimization of MR acquisition parameters for the measurement of small objects is then distributed to the entire work.
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MR image data processing in study of tissue cultures
Bidman, Petr ; Šmirg, Ondřej (referee) ; Gescheidtová, Eva (advisor)
Techniques based on principle of nuclear magnetic resonance (NMR) belong to the most modern methods for studying physical, chemical and biological properties of materials [1]. Their universality predestinates them for application in a wide range of scientific disciplines, e.g. in medicine to study properties of tissues. Advantages of techniques utilizing principle of NMR consist in their noninvasiveness and thoughtfulness to human health or studied material. In addition, no undesirable effects of magnetic force field have been so far proved by research. Objectives of this Diploma Thesis are evaluation of MR images of tissue cultures and determination of protons amount included in them. Theoretic part of the Thesis is devoted to the bases of NMR and provides basic overview of MR methods. The spin echo method (SE) is described in more details, including the process of assessment of technique’s parameters, e.g. general magnetization. Practical part of Diploma Thesis is focused on determination of integral of image intensity of clusters of early somatic embryos. Intensity integrals characterizing number of protons in growing cluster were calculated from MR images of spruce embryos contaminated by lead. The intensity of an image weighted by spin density is proportionate to the number of proton nuclei in the chosen slice. The Thesis describes further evaluation of relaxation time T2 from MR images weighted by spin density. Following part is dealing with determination of diffusion from MR images with application of compensation methods, three-measurement arrangement and presentation of obtained results. Images were processed by use of MATLAB and MAREVISI programs.
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Processing of images of early spruce needles scanned by MR technology
Raichl, Jaroslav ; Říha, Kamil (referee) ; Gescheidtová, Eva (advisor)
This semester project deals with filtering of the images detected by use of NMR obtained by NMR application measurement of nuclear magnetic resonance (NMR). This thesis includes the theory of nuclear magnetic resonance, digital filters, basic digital filter banks structures, theory of Wavelet transformation and description of Signal to Noise Ratio calculation. Basic procedure of the MR signal denoising is summarized in the theoretical part of the thesis. The denoising of the images detected by nuclear magnetic resonance is described. In experimental part filtering methods for images denoising are described, which are implemented in program Matlab. These methods are based on Wavelet transformation, digital filter banks with proper thresholding. Effectiveness of filtering methods designed was verified on 2D NMR images. All of these 2D images were measure on MR tomography in the Institute of Scientific Instruments Academy of Science of the Czech Republic in Brno.
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Image signal processing by wavelet
Slávik, Vladimír ; Gescheidtová, Eva (referee) ; Kubásek, Radek (advisor)
The first part of text introduces reader to basic theory of wavelet transform and its realization by filter banks. WT of two-dimensional signals is shown and a particular application of WT in this domain - signal denoising, is discussed. The second part describes the application for image denoising realized in MATLAB from both user's and programmer's viewpoint.
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Filtering methods for MR images processing
Pláněk, Jiří ; Smékal, Zdeněk (referee) ; Gescheidtová, Eva (advisor)
This master´s thesis deals with wavelet transformation and its signal and image noise reduction application method. Significant parameters problems as a wavelet type, a threshold technique selection, a threshold level and a level analysis selection for successful signal and noise image filtering are described. A relation between wavelet transformation and digital bank filter is used by anti-noise and sub-bandwidth filtration. A part of the master´s thesis is focused on nuclear magnetic resonation, where jaw-joint image is processed. Jaw joint image noise reduction filtration methods are used in experimental part of the master´s thesis. Consequently, filtration methods improve a jaw joint image quality, which helps a doctor with patient health state condition. Different types of wavelets were tested and in different application methods order. Filtration methods results were visually compared; therefore any conclusion comparison has subjective matter. Accordingly, only doctor is able to resolve which filtration method is convenient to use to determine patient health state.
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