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National Repository of Grey Literature

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Segmentation of soft tissues in facial part of mouse embryos from X-ray computed microtomography data Janštová, Michaela ; Harabiš, Vratislav (referee) ; Chmelík, Jiří (advisor) This diploma thesis deals with a segmentation of soft tissues in facial part of mouse embryos in Matlab. Segmentation of soft tissues of mouse embryos was not fully automated and every case needs a specific solution. Solving parts of this issues can provide valuable data for evolutionary biologists. Issues about staining and segmentation techniques are described. On the basis of accessible literature otsu thresholding, region growing, k-means clustering and segmentation with atlas were tested. In the end of this paper are those methods tested and evaluated on 3D microtomography data. Detailed record

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