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National Repository of Grey Literature

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Application for Alignment of DNA Parts Kašpárek, Tomáš ; Žák, Jakub (referee) ; Rozman, Jaroslav (advisor) This thesis deals with DNA sequences alignment methods with focus on execution speed of given task and its optimality. The outcome of this thesis results in multiple programs, which presents DNA alignment algorithms and their versions programmed with OpenCL libraries, which are optimized on calculation rate. Text of this thesis apprises reader with DNA alignment problematic and its importance in biology. Further, algorithms for DNA alignment and options of their speed-up using libraries like CUDA or OpenCL are presented. Detailed record

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