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National Repository of Grey Literature

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Detecting exact and approximate repeats in DNA based on string matching Martaus, Pavel ; Provazník, Ivo (referee) ; Kubicová, Vladimíra (advisor) This work is described in the theoretical part of repetitive DNA, their types and methods to search in DNA sequence. In the practical part is designed and described an algorithm for finding tandem repeats using Hamming, then its evaluation and utilization. Detailed record

Searching repetitive DNA in nucleotide sequences Moskovská, Kateřina ; Provazník, Ivo (referee) ; Kubicová, Vladimíra (advisor) This bachelor thesis deals with problem of repetitive DNA and algorithms for searching tandem repeats. Tandem repeats are important for biological industry. They are used as gene marker for creating genetic maps, profiles of DNA for paternity testing and in forensic sphere. Tandem repeats wreak several sever humen illness and it is another reason for their searching. Therefore are algorithms for searching of tandem repeats objects of many studies. We can divided algorithms to two main groups – algorithms based on string matching and algorithms based on digital signal processing. Task of this bachelor thesis is choose one member of each group and propose their implementation and than implement them in program Matlab. Result of this thesis should be comparison both programs. This comparison pass off on the basis of chosen criterion and several sequences. Both program transform these sequences and than can be programs compare. Detailed record

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