| Institute of Archaeology, Brno (99) |
| Institute of Archaeology, Prague (249) |
| Astronomical Institute (244) |
| Biology Centre (418) |
| Institute of Biotechnology (48) |
| Institute of Botany (397) |
| Institute of Biophysics (298) |
| Institute of Entomology (50) |
| Institute of Ethnology (535) |
| Institute of Pharmacology (1) |
| Institute of Philosophy (534) |
| Institute of Physics (583) |
| Institute of Physiology (80) |
| Institute of Geophysics (197) |
| Institute of Geology (463) |
| Institute of History (488) |
| Institute of Hydrobiology (116) |
| Library of the ASCR (78) |
| Masaryk Institute and Archives of the ASCR (496) |
| Institute of Mathematics (417) |
| Institute of Microbiology (506) |
| Economics Institute (920) |
| Oriental Institute (39) |
| Institute of Parasitology (8) |
| Institute of Psychology (320) |
| Institute of Slavonic Studies (114) |
| Institute of Sociology (2,847) |
| Institute of Sociology (CVVM) (55) |
| Technology Centre (0) |
| Institute of Analytical Chemistry (493) |
| Institute of Inorganic Chemistry (421) |
| Institute of Vertebrate Biology (529) |
| Institute of Art History (356) |
| Institute of Experimental Botany (113) |
| Institute of Experimental Medicine (143) |
| Institute of Photonics and Electronics (627) |
| J. Heyrovsky Institute of Physical Chemistry (472) |
| Institute of Physical Engineering (0) |
| Institute of Atmospheric Physics (265) |
| Institute of Physics of Materials (1,007) |
| Institute of Plasma Physics (600) |
| Institute of Geonics (1,327) |
| Institute of Chemical Process Fundamentals (2,069) |
| Institute of Computer Science (1,644) |
| Nuclear Physics Institute (442) |
| Institute of Macromolecular Chemistry (436) |
| Institute of Plant Molecular Biology (42) |
| Institute of Molecular Genetics (85) |
| Institute of Organic Chemistry and Biochemistry (575) |
| Institute of Czech Literature (455) |
| Institute of Electrical Engineering (0) |
| Institute of Hydrodynamics (617) |
| Institute of the Czech Language (784) |
| Institute for Classical Studies (0) |
| Institute of Contemporary History (286) |
| Institute of Scientific Instruments (1,419) |
| Institute of Soil Biology (192) |
| Institute of State and Law (162) |
| Institute of Rock Structure and Mechanics (378) |
| Institute of Theoretical and Applied Mechanics (1,299) |
| Institute of Information Theory and Automation (1,566) |
| Institute of Thermomechanics (3,158) |
| Global Change Research Institute (579) |
| Institute of Animal Physiology and Genetics (93) |
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