| Institute of Archaeology, Brno (102) |
| Institute of Archaeology, Prague (261) |
| Astronomical Institute (249) |
| Biology Centre (477) |
| Institute of Biotechnology (50) |
| Institute of Botany (408) |
| Institute of Biophysics (299) |
| Institute of Entomology (50) |
| Institute of Ethnology (542) |
| Institute of Pharmacology (1) |
| Institute of Philosophy (545) |
| Institute of Physics (610) |
| Institute of Physiology (80) |
| Institute of Geophysics (197) |
| Institute of Geology (473) |
| Institute of History (505) |
| Institute of Hydrobiology (116) |
| Library of the ASCR (81) |
| Masaryk Institute and Archives of the ASCR (516) |
| Institute of Mathematics (441) |
| Institute of Microbiology (511) |
| Economics Institute (992) |
| Oriental Institute (41) |
| Institute of Parasitology (8) |
| Institute of Psychology (324) |
| Institute of Slavonic Studies (114) |
| Institute of Sociology (3,056) |
| Institute of Sociology (CVVM) (55) |
| Technology Centre (0) |
| Institute of Analytical Chemistry (505) |
| Institute of Inorganic Chemistry (427) |
| Institute of Vertebrate Biology (534) |
| Institute of Art History (371) |
| Institute of Experimental Botany (113) |
| Institute of Experimental Medicine (144) |
| Institute of Photonics and Electronics (627) |
| J. Heyrovsky Institute of Physical Chemistry (495) |
| Institute of Physical Engineering (0) |
| Institute of Atmospheric Physics (283) |
| Institute of Physics of Materials (1,041) |
| Institute of Plasma Physics (608) |
| Institute of Geonics (1,348) |
| Institute of Chemical Process Fundamentals (2,164) |
| Institute of Computer Science (1,672) |
| Nuclear Physics Institute (447) |
| Institute of Macromolecular Chemistry (441) |
| Institute of Plant Molecular Biology (42) |
| Institute of Molecular Genetics (86) |
| Institute of Organic Chemistry and Biochemistry (588) |
| Institute of Czech Literature (467) |
| Institute of Electrical Engineering (0) |
| Institute of Hydrodynamics (638) |
| Institute of the Czech Language (810) |
| Institute for Classical Studies (0) |
| Institute of Contemporary History (287) |
| Institute of Scientific Instruments (1,653) |
| Institute of Soil Biology (192) |
| Institute of State and Law (168) |
| Institute of Rock Structure and Mechanics (378) |
| Institute of Theoretical and Applied Mechanics (1,386) |
| Institute of Information Theory and Automation (1,591) |
| Institute of Thermomechanics (3,355) |
| Global Change Research Institute (617) |
| Institute of Animal Physiology and Genetics (95) |
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