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Benchmark of the Computational Tools for the Prediction of the Effect of Mutations on Protein Stability
Berezný, Matej ; Martínek, Tomáš (oponent) ; Musil, Miloš (vedoucí práce)
Protein design necessitates understanding how mutations influence their stability. Numerous online predictors exist for this aim, but it is challenging to compare them or to use them collectively. For that purpose I developed BenchStab, a console application/Python package designed for the swift and straightforward operation of 18 predictors, gathering results from a series of mutants. Benchstab is freely available on GitHub and can be expanded to include more predictors. To avoid potential dataset bias towards some predictors, I have constructed a new unique dataset, sourced from FireProtDB. I utilized this dataset to assess 24 distinct prediction methods from the three different perspectives.

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