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Computer modeling of interactions between hyaluronan and polylysine
Zlochová, Barbora ; Řeha,, David (referee) ; Minofar, Babak (advisor)
Hyaluronic acid is a biosaccharide naturally occurring in human tissues. As a biomaterial with a number of interesting properties, it is the subject of interest in many industrial areas such as cosmetics and medicine. It is generally known that hyaluronic acid polymers interact with peptide polymers to form complexes with various physical properties, with great potential in the field of material science. In this work, the aim was to characterize the formation of just such complexes on the case of one polymer fiber of hyaluronic acid with polylysine fibers with different numbers of lysine subunits. In the theoretical part of the work hyaluronic acid and polylysine are described in terms of their general structural properties, uses and interactions, general computational chemistry is explained, principles and parameters of molecular dynamics MD are defined, and finally the MD simulation scheme according to which the simulations in this work were built is described. In the experimental part of the work, the upcoming simulation systems PLL8, PLL10, 1HA25-8PLL10, 1HA25-10PLL10, 1HA25-12PLL10 together with the parameters and tools that were used for their construction, the work in the GROMACS environment, in which the entire construction of the simulation systems took place, was described, the preparation of the MD simulation systems itself, the start of their computational solution and analysis in the MetaCentrum was also described. In the simulated systems, the number of hydrogen bonds between the HA polymer fiber and PLL peptides of different concentrations and their interactions with the surrounding solvent were analyzed. The radius of gyration of the HA polymer fiber in the presence of PLL peptides at different concentrations was studied. The radial distribution function of the terminal residues on the PLL fibers in the vicinity of the terminal residues on the HA surface at different PLL concentrations was determined. By analyzing the data, we managed to define and determine how the interaction between HA and PLL complexes changes.
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Isolation of PHA from bacterial biomass and their subsequent purification
Zlochová, Barbora ; Kouřilová, Xenie (referee) ; Obruča, Stanislav (advisor)
This bachelor thesis deals with the isolation and characterization of the bacterial polymer PHA isolated from the bacterial strain Halomonas halophila (CCM 3662) by osmotic stress in distilled water, ie hypo shock, when the cells crack and release PHA. The addition of biosurfactants simultaneously solubilizes the proteins and lipids of the residual biomass, theoretically achieving a purer PHB product without the use of toxic substances such as chloroform. The theoretical part of the work focuses on PHA in terms of their general properties and use, the mechanism of synthesis of PHA microorganisms and their subsequent degradation and the existing strategy for isolating PHA from bacterial biomass. The experimental part describes the production of PHB bacteria Halomonas halophila and the subsequent process of isolation of PHB by hypo shock of halophilic bacteria in distilled water with the addition of selected biosurfactants. Biosurfactants used in the work are coconut soap, lecithin, rhamnolipids, sophorolipids, coco glucoside, lauryl glucoside and cocoamidopropyl betaine. The properties of the isolated PHB material were analyzed by gas chromatography with FID detection and SEC-MALS and FTIR methods. Based on the results, we chose the pair of coco glucoside and lauryl glucoside as the most suitable biosurfactants that can be used to isolate PHB from bacterial biomass. In combination with washing the material in ethanol, at concentration of biosurfactant 5 g/l and isolation in 70 ° C, it was possible to achieve a purity of 90 % of material using cocot glucoside and 89 % purity of material using lauryl glucoside.
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Isolation of PHA from bacterial biomass and their subsequent purification
Zlochová, Barbora ; Kouřilová, Xenie (referee) ; Obruča, Stanislav (advisor)
This bachelor thesis deals with the isolation and characterization of the bacterial polymer PHA isolated from the bacterial strain Halomonas halophila (CCM 3662) by osmotic stress in distilled water, ie hypo shock, when the cells crack and release PHA. The addition of biosurfactants simultaneously solubilizes the proteins and lipids of the residual biomass, theoretically achieving a purer PHB product without the use of toxic substances such as chloroform. The theoretical part of the work focuses on PHA in terms of their general properties and use, the mechanism of synthesis of PHA microorganisms and their subsequent degradation and the existing strategy for isolating PHA from bacterial biomass. The experimental part describes the production of PHB bacteria Halomonas halophila and the subsequent process of isolation of PHB by hypo shock of halophilic bacteria in distilled water with the addition of selected biosurfactants. Biosurfactants used in the work are coconut soap, lecithin, rhamnolipids, sophorolipids, coco glucoside, lauryl glucoside and cocoamidopropyl betaine. The properties of the isolated PHB material were analyzed by gas chromatography with FID detection and SEC-MALS and FTIR methods. Based on the results, we chose the pair of coco glucoside and lauryl glucoside as the most suitable biosurfactants that can be used to isolate PHB from bacterial biomass. In combination with washing the material in ethanol, at concentration of biosurfactant 5 g/l and isolation in 70 ° C, it was possible to achieve a purity of 90 % of material using cocot glucoside and 89 % purity of material using lauryl glucoside.
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