| Institute of Archaeology, Brno (91) |
| Institute of Archaeology, Prague (233) |
| Astronomical Institute (233) |
| Biology Centre (328) |
| Institute of Biotechnology (47) |
| Institute of Botany (379) |
| Institute of Biophysics (295) |
| Institute of Entomology (50) |
| Institute of Ethnology (489) |
| Institute of Pharmacology (1) |
| Institute of Philosophy (519) |
| Institute of Physics (515) |
| Institute of Physiology (76) |
| Institute of Geophysics (197) |
| Institute of Geology (437) |
| Institute of History (456) |
| Institute of Hydrobiology (116) |
| Library of the ASCR (68) |
| Masaryk Institute and Archives of the ASCR (472) |
| Institute of Mathematics (397) |
| Institute of Microbiology (491) |
| Economics Institute (755) |
| Oriental Institute (36) |
| Institute of Parasitology (8) |
| Institute of Psychology (312) |
| Institute of Slavonic Studies (112) |
| Institute of Sociology (2,443) |
| Institute of Sociology (CVVM) (55) |
| Technology Centre (0) |
| Institute of Analytical Chemistry (435) |
| Institute of Inorganic Chemistry (410) |
| Institute of Vertebrate Biology (510) |
| Institute of Art History (304) |
| Institute of Experimental Botany (113) |
| Institute of Experimental Medicine (130) |
| Institute of Photonics and Electronics (626) |
| J. Heyrovsky Institute of Physical Chemistry (422) |
| Institute of Physical Engineering (0) |
| Institute of Atmospheric Physics (259) |
| Institute of Physics of Materials (980) |
| Institute of Plasma Physics (580) |
| Institute of Geonics (1,239) |
| Institute of Chemical Process Fundamentals (1,914) |
| Institute of Computer Science (1,601) |
| Nuclear Physics Institute (428) |
| Institute of Macromolecular Chemistry (430) |
| Institute of Plant Molecular Biology (42) |
| Institute of Molecular Genetics (80) |
| Institute of Organic Chemistry and Biochemistry (535) |
| Institute of Czech Literature (418) |
| Institute of Electrical Engineering (0) |
| Institute of Hydrodynamics (581) |
| Institute of the Czech Language (734) |
| Institute for Classical Studies (0) |
| Institute of Contemporary History (259) |
| Institute of Scientific Instruments (1,098) |
| Institute of Soil Biology (192) |
| Institute of State and Law (152) |
| Institute of Rock Structure and Mechanics (370) |
| Institute of Theoretical and Applied Mechanics (1,123) |
| Institute of Information Theory and Automation (1,482) |
| Institute of Thermomechanics (2,944) |
| Global Change Research Institute (515) |
| Institute of Animal Physiology and Genetics (92) |
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