| Institute of Archaeology, Brno (94) |
| Institute of Archaeology, Prague (238) |
| Astronomical Institute (244) |
| Biology Centre (360) |
| Institute of Biotechnology (47) |
| Institute of Botany (388) |
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| Institute of Geophysics (197) |
| Institute of Geology (448) |
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| Library of the ASCR (70) |
| Masaryk Institute and Archives of the ASCR (485) |
| Institute of Mathematics (406) |
| Institute of Microbiology (500) |
| Economics Institute (813) |
| Oriental Institute (37) |
| Institute of Parasitology (8) |
| Institute of Psychology (315) |
| Institute of Slavonic Studies (113) |
| Institute of Sociology (2,695) |
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| Technology Centre (0) |
| Institute of Analytical Chemistry (453) |
| Institute of Inorganic Chemistry (413) |
| Institute of Vertebrate Biology (520) |
| Institute of Art History (326) |
| Institute of Experimental Botany (113) |
| Institute of Experimental Medicine (138) |
| Institute of Photonics and Electronics (626) |
| J. Heyrovsky Institute of Physical Chemistry (430) |
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| Institute of Atmospheric Physics (261) |
| Institute of Physics of Materials (1,002) |
| Institute of Plasma Physics (591) |
| Institute of Geonics (1,277) |
| Institute of Chemical Process Fundamentals (1,955) |
| Institute of Computer Science (1,617) |
| Nuclear Physics Institute (437) |
| Institute of Macromolecular Chemistry (430) |
| Institute of Plant Molecular Biology (42) |
| Institute of Molecular Genetics (81) |
| Institute of Organic Chemistry and Biochemistry (545) |
| Institute of Czech Literature (434) |
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| Institute of Hydrodynamics (599) |
| Institute of the Czech Language (760) |
| Institute for Classical Studies (0) |
| Institute of Contemporary History (267) |
| Institute of Scientific Instruments (1,245) |
| Institute of Soil Biology (192) |
| Institute of State and Law (157) |
| Institute of Rock Structure and Mechanics (376) |
| Institute of Theoretical and Applied Mechanics (1,202) |
| Institute of Information Theory and Automation (1,526) |
| Institute of Thermomechanics (3,051) |
| Global Change Research Institute (546) |
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