| Institute of Archaeology, Brno (94) |
| Institute of Archaeology, Prague (236) |
| Astronomical Institute (233) |
| Biology Centre (340) |
| Institute of Biotechnology (47) |
| Institute of Botany (381) |
| Institute of Biophysics (298) |
| Institute of Entomology (50) |
| Institute of Ethnology (504) |
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| Institute of Physiology (77) |
| Institute of Geophysics (197) |
| Institute of Geology (442) |
| Institute of History (461) |
| Institute of Hydrobiology (116) |
| Library of the ASCR (69) |
| Masaryk Institute and Archives of the ASCR (474) |
| Institute of Mathematics (400) |
| Institute of Microbiology (499) |
| Economics Institute (770) |
| Oriental Institute (36) |
| Institute of Parasitology (8) |
| Institute of Psychology (314) |
| Institute of Slavonic Studies (113) |
| Institute of Sociology (2,561) |
| Institute of Sociology (CVVM) (55) |
| Technology Centre (0) |
| Institute of Analytical Chemistry (443) |
| Institute of Inorganic Chemistry (410) |
| Institute of Vertebrate Biology (515) |
| Institute of Art History (314) |
| Institute of Experimental Botany (113) |
| Institute of Experimental Medicine (136) |
| Institute of Photonics and Electronics (626) |
| J. Heyrovsky Institute of Physical Chemistry (429) |
| Institute of Physical Engineering (0) |
| Institute of Atmospheric Physics (260) |
| Institute of Physics of Materials (997) |
| Institute of Plasma Physics (589) |
| Institute of Geonics (1,260) |
| Institute of Chemical Process Fundamentals (1,951) |
| Institute of Computer Science (1,609) |
| Nuclear Physics Institute (430) |
| Institute of Macromolecular Chemistry (430) |
| Institute of Plant Molecular Biology (42) |
| Institute of Molecular Genetics (80) |
| Institute of Organic Chemistry and Biochemistry (542) |
| Institute of Czech Literature (428) |
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| Institute of Hydrodynamics (593) |
| Institute of the Czech Language (751) |
| Institute for Classical Studies (0) |
| Institute of Contemporary History (262) |
| Institute of Scientific Instruments (1,183) |
| Institute of Soil Biology (192) |
| Institute of State and Law (155) |
| Institute of Rock Structure and Mechanics (374) |
| Institute of Theoretical and Applied Mechanics (1,159) |
| Institute of Information Theory and Automation (1,509) |
| Institute of Thermomechanics (2,991) |
| Global Change Research Institute (541) |
| Institute of Animal Physiology and Genetics (93) |
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