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Immunogenetic and hormonal markers of predisposition to systemic rheumatic diseases particularly systemic lupus erythematosus
Fojtíková, Markéta ; Pavelka, Karel (advisor) ; Hrnčíř, Zbyněk (referee) ; Rovenský, Jozef (referee)
Fojtikova 2011 INTRODUCTION: Several factors like genetic susceptibility is required for systemic rheumatic diseases development. Immunomodulatory PRL effect supports autoimmunity. AIMS: 1. To detect the immunogenetic background (alleles HLA class I, II and microsatellite polymorphism of the transmembrane part exon 5 of MIC-A gene) of SLE and PsA. 2. To detect PRL serum and synovial fluid with regard to clinical and laboratory RA activity. 3. To find the role of the functional polymorphism -1149G/T SNP PRL of extrapituitary promoter of PRL gene in SLE, RA, PsA, SSc and inflammatory myopathies development. METHODS: Genetic analyses of pateints with SLE (n=156), RA (n=173), PsA (n=100), SSc (n=75), PM (n=47) a DM (n=68) and 123 healthy individuals: PCR-SSP (HLA clase I and II), PCR-fragment analysis (MIC-A) a PCR-RFLP (-1149 G/T SNP PRL). In 29 RA a 26 OA PRL serum and synovial fluid concentrations were detected using immunoradiometric assay. RESULTS: 1. The allele HLA-DRB1*03 (pc=0.008; OR 2.5) and haplotype HLA-DRB1*03-DQB1*0201 (pc <0.001; OR 4.54) were determined as risk immunogenetic markers for SLE in Czech population. In SLE versus controls allele MIC-A5.1 was increased (pc =0.005; OR 1.88). MIC-A5.1 together with HLA-DRB1*03 increases the risk for SLE development, pc <0.000001; OR 9.71....
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Topographic mapping of rock formations usig GIS methods
Bashir, Faraz Ahmed ; Štefanová, Eva (advisor) ; Pavelka, Karel (referee)
Topographic mapping of rock formations using GIS methods Abstract This thesis deals with issues of creating 3D models of rock formations with data from terrestrial laser scanning, close range photogrammetry and UAV photogrammetry. The theoretical part focuses on explaining functioning and usage of those methods. Beside that there is described issues of 3D point cloud filtering. Practical part of this work describes data collecting and processing procedure. Further there is proposed filtering process which aim to remove noise points from point clouds and remove vegetation with combination of vegetation index ExG, clustering algorithm DBSCAN and Hough Transform. The proposed method is tested on the selected rock formation in Bohemian Switzerland National Park. The evaluation of the proposed method is based on comparison of models filtered with proposed method with reference models, which are filtered manually. Finally, the achieved accuracy of the models is evaluated using geodetic measurements. key words laser scanning, photogrammetry, UAV, point cloud, data filtering
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Biomarkers of subchondral bone damage caused by inflammation in axial spondyloarthritis.
Bubová, Kristýna ; Pavelka, Karel (advisor) ; Horák, Pavel (referee) ; Hrnčíř, Zbyněk (referee)
Background: Axial spondyloarthritis (axSpA) is a chronic inflammatory rheumatic disease affecting primarily the spine and its adjacent structures. The disease is characterized not only by destructive joint changes but also by excessive osteoproduction, which can lead to gradual ankylosis of the spine and thus significantly reduce the mobility and quality of life. The pathogenesis of the disease is not yet fully understood, but a strong genetic background is suggested, along with dysregulation of tissue metabolism resulting from an imbalance of pro- and anti-inflammatory immune mechanisms. We are still lacking biomarker with sufficient sensitivity and specificity which could help to identify early diagnosis, to monitor subchondral damage, and to differentiate rapidly progressing patients. The aim of this work was to determine the levels of potential biomarkers of connective tissue metabolism, fat metabolism and new promising biomarkers for both disease subtypes, their relationship to disease activity and progressive structural changes. Results: We have shown increased serum/plasma levels of connective tissue metabolism biomarkers (especially matrix metalloproteinase mediated metabolites), which were able to differentiate patients with early and late forms of axSpA from healthy individuals (HC), were...
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Importance of Concomitant Fibromyalgia in Rheumatoid Arthritis and Systemic Lupus
Tomš, Jan ; Malý, Jaroslav (advisor) ; Pavelka, Karel (referee) ; Horák, Pavel (referee)
Background: Fibromyalgia (FM) is a chronic syndrom characterized by dysfunction of pain processing and regulation. It occurs relatively often in concomitance with the connective tissue diseases (CTD), in particular rheumatoid arthritis (RA) and systemic lupus erythematosus (SLE). FM may be involved in their final clinical manifestation and may have important consequencies for diagnosis and treatment. Objectives: To examine frequency of FM in the prime CTD, FM impact on their clinical manifestation and relationship to assessment of the clinical activity in regional, monocentric, cross- sectional, descriptive study. Methods: Study groups of 120 adult patients with RA, 91 with SLE, 30 with polymyositis/ dermatomyositis (PM/DM) and 28 with systemic sclerosis (SSc) were evaluated. Each patient was examined on the presence of concomitant FM according to ACR (American College of Rheumatology) classification criteria (1990). The following data were recorded: sociodemographic data, history including comorbidities, contemporary immunosupressive and analgesic therapy, laboratory parameters (serum inflammatory markers, relevant autoantibodies). Pain, fatigue and muskuloskeletal stiffness were assessed on horizontal 100 mm visual analogue scale. Patients' function status was evaluated using HAQ (Health...
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Laboratory/Field Spectroscopy and Remote Sensing Image Data for Vegetation Studies
Červená, Lucie ; Kupková, Lucie (advisor) ; Pavelka, Karel (referee) ; Müllerová, Jana (referee)
Dominant vegetation species of two structurally and functionally different montane ecosystems were studied by means of laboratory and field spectroscopy and remote sensing image data: (1) a homogeneous human-influenced evergreen coniferous forest represented by a Norway spruce forest in the Krušné hory Mountains and (2) a heterogeneous natural ecosystem of a relict arctic-alpine tundra in the Krkonoše Mountains with predominance of grasses. The first part dealing with the Norway spruce forest is especially focused on the methods of laboratory spectroscopy. The assessment of Norway spruce stands on a regional and a global scales requires detailed knowledge of their spectral properties at the level of needles and shoots in the beginning, but ground research is very time-demanding. Open spectral libraries could help to get more ground-truth data for subsequent analysis of tree species in forests ecosystems. However, the problem may arise with the comparability of spectra taken by different devices. The present thesis focuses on a comparability of spectra measured by a field spectroradiometer coupled with plant contact probe and/or two integrating spheres (Paper 3) and proves the significant differences in spruce needle spectra measured by the contact probe and integrating sphere, spectra of...
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Markers of joint inflammation related to disease activity in rheumatoid arthritis.
Hurňáková, Jana ; Pavelka, Karel (advisor) ; Horák, Pavel (referee) ; Hrnčíř, Zbyněk (referee)
Background: Rheumatoid arthritis (RA) is a common chronic autoimmune disorder characterised by persistent synovitis, typically manifested as symmetric polyarthritis of small hand joints with various extra-articular manifestations. Accurate disease activity measurement is a key component of RA management that facilitates therapeutic optimalization in order to slow down the disease progression and to prevent an irreversible joint damage. The aim of this work was to study the role of candidate serum inflammatory markers and their associations with the disease activity in patients with RA presented by traditional variables of disease activity as well as by musculoskeletal ultrasonography. Results: The first part of our work pointed out relationship between serum calprotectin and clinical as well as ultrasound activity in RA. We have revealed that serum calprotectin is an independent predictor of ultrasound synovitis. Moreover, we have demonstrated the potential of calprotectin to identify patients with residual activity in spite of achieving clinical remission. In the second part, we have provided a detailed analysis of 20 candidate serum markers and found out a tight associations between IL-6, IL-7, IL-22, IL-34, YKL-40, CXCL-13, MMP-3, resistin and visfatin with clinical and ultrasound activity....
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Application of imaging spectroscopy in monitoring of vegetation stress caused by soil pollutants in the Sokolov lignite basin
Mišurec, Jan ; Kupková, Lucie (advisor) ; Pavelka, Karel (referee) ; Homolová, Lucie (referee)
Forests can be considered as one of the most important Earth's ecosystems not only because of oxygen production and carbon sequestration via photosynthesis, but also as a source of many natural resources (such as wood) and as a habitat of many specific plants and animals. Monitoring of forest health status is thus crucial activity for keeping all production and ecosystem functions of forests. The main aim of the thesis is development of an alternative approach for forest health status based on airborne hyperspectral data (HyMap) analysis supported by field sampling. The proposed approach tries to use similar vegetation parameters which are used in case of the current methods of forest health status assessment based on field inspections. It is believed that importance of such new methods will significantly increase in the time when the planned satellite hyperspectral missions (e.g. EnMap) will move into operational phase. The developed forest health monitoring approach is practically demonstrated on mature Norway spruce (Picea abies L. Karst) forests of the Sokolov lignite basin which were affected by long-term coal mining and heavy industry and therefore high variability of forest health status was assumed in this case. Two leaf level radiative transfer models were used for simulating spectral...
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Epidemiological aspects of inflammatory rheumatic diseases and diffusional diseases of binding tissue.
Hánová, Petra ; Pavelka, Karel (advisor) ; Bencko, Vladimír (referee) ; Horák, Pavel (referee)
v anglickém jazyce Introduction: No information was known about frequency of common inflammatory disorders in rheumatology in the Czech Republic. Aims of the study: To estimate the standardized annual incidence (INC) and point prevalence (PREV) of six diseases (rheumatoid arthritis-RA, juvenile idiopathic arthritis-JIA, gout, psoriatic arthritis-PsA, ankylosing spondylitis-AS, reactive arthritis-ReA) in a population-based study in two regions of the Czech Republic (CR). Methods: INC: Incident cases were registered on condition that the definite diagnosis was confirmed according to existing classification criteria during the study period. PREV was studied on the basis of identification of established diagnoses at a time point. Crude rates were standardized for age and sex. Results: Both INC and PREV are shown per 100.000 inhabitants. RA INC:31 (95%CI 20-42), PREV:610 (95%CI 561-658). Gout-INC:41 (95%CI 28-53), PREV:300 (95% CI 266-334). JIA-INC: 13 (95% CI 1-20), PREV:140 (95%CI 117-280). PsA-INC:3,6 (95% CI 1-8), PREV:49 (95%CI 40-60). AS-INC:6 (95% CI 3-11), PREV:94 (95% CI 94-109). ReA-INC:9 (95% CI 6-15), PREV:91 (95% CI 78-106). Conclusion: This is the first population-based study estimating annual incidence and prevalence rates of the most common rheumatological disorders in the Czech...
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Methodology of the use of non-invasive surveying methods - ground-penetrating radar, impact-echo method and ultrasonic transmission measurement of the surface to assess the condition and construction details of the sandstone coat of buildings
Havlín, J. ; Slavíková, M. ; Válek, Jan ; Pavelka, K.
The methodology describes principles of selected methods (ground-penetrating radar, impact-echo method, ultrasound), their potentials, limitations and advantages when combined during the survey of stone coats of structures. Further on, the methodology indicates the process of the measurement itself and evaluation of the collected data.
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