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Hydrogen quantification by electron spectroscopy
Endstrasser, Zdeněk ; Polčák, Josef (referee) ; Čechal, Jan (advisor)
The absence of hydrogen in the photoelectron spectrum remains one of the greatest limitations of X-ray photoelectron spectroscopy. The main aim of this work is therefore to determine the concentration of hydrogen atoms in the near surface region of a sample. The REELS electron spectroscopic method based on quasi-elastic electron scattering is used for this purpose. The choice of this method was given mainly by the fact that the photoelectron spectrometers has an electron source in the basic equipment, so there is no requirement to purchase additional equipment. In our case, measurements were realized using the AXIS Supra photoelectron spectrometer in CEITEC laboratories. We were primarily focused on the study of polymer samples in this work. The gus cluster ion source was used for sputter cleaning of the sample surface. Then the XPS and REELS measurements were performed on such cleaned samples. The obtained data were subsequently evaluated, and the results discussed. The most important output of this work was to develop the methodology of detection and quantification of hydrogen atoms. However, the theoretical description of the methods used, and the appreciation of critical aspects associated with the use of the REELS method are also embraced. In particular, the effect of sample charging and electron dose on measurement results is discussed.
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Semiconductor diagnostics and monitoring of chemical reactions by SIMS method
Janák, Marcel ; Skladaný, Roman (referee) ; Bábor, Petr (advisor)
Hmotnostná spektrometria sekundárnych iónov s analýzou doby letu (TOF-SIMS) patrí vďaka vysokej citlivosti na prvkové zloženie medzi významné metódy analýzy pevných povrchov. Táto práca demonštruje možnosti TOF-SIMS v troch odlišných oblastiach výskumu. Prvá časť práce sa zaoberá lokalizáciou defektov vysokonapäťových polovodičových súčiastok, ktorá je nevyhnutná k ich ďalšiemu skúmaniu metódou TOF-SIMS. Bola navrhnutá experimentálna zostava s riadiacim softvérom umožňujúca automatizované meranie záverného prúdu v rôznych miestach polovodičový súčiastok. Druhá časť práce sa zaoberá kvantifikáciou koncentrácie Mg dopantov v rôznych hĺbkach vzoriek AlGaN. Kvantifikácia je založená na metóde RSF a umožňuje charakterizáciu AlGaN heteroštruktúr určených na výrobu tranzistorov s vysokou elektrónovou mobilitou (HEMT) alebo na výrobu rôznych optoelektronických zariadení. Sada 12 AlGaN kalibračných vzoriek dopovaných Mg, určených na kvantifikáciu hĺbkových profilov, bola pripravená metódou iónovej implantácie. Posledná časť práce demonštruje možnosti metódy TOF-SIMS vo výskume heterogénnej katalýzy. Hlavným objektom nášho výskumu je dynamika oxidácie CO na oxid uhličitý na polykryštalickom povrchu platiny za tlakov vysokého vákua. V tejto práci prezentujem prvé TOF-SIMS pozorovanie časopriestorových vzorov v reálnom čase, ktoré vznikajú v dôsledku rôzneho pokrytia povrchu Pt reaktantmi. Výsledky TOF-SIMS experimentu boli porovnané s výsledkami podobného experiment v rastrovacom elektrónovom mikroskope (SEM).
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Classification of marked cells migration in tissue
Solař, Jan ; Skopalík, Josef (referee) ; Čmiel, Vratislav (advisor)
This diploma thesis deals with analysing of modern methods for cell detection, visualization and quantification in 3D space. The first section deals with optical methods for cells detection. There is detailed discussion about cell labeling and detection on confocal microscopy. There is also description about developed algorithm for whole cell volume quantification from microscopy images. This could made a comparsion of fluorescence signal according to time of cell labeling and according to cell shapes. There was also optimalization of handmade tissue phantoms visualization. It could be compared a possibilities of cell detections in these phantoms by confocal microscopy and OCT. It was also implemented algorithm for quantification of cells from OCT images. Besides confocal microscopy and OCT cells are also analyzed by other methods. The last part is the Conclusion of results and comparison of used methods.
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MRI of Rats - Quantification of T1 in Myocardium
Vitouš, Jiří ; Mézl, Martin (referee) ; Jiřík, Radovan (advisor)
This thesis focuses on cardiac imaging and quantification of T1 relaxation time in rat hearts. Its main focus is to investigate available methods for such quantification and their application in the development of quantification tools. The large impact is given to methods of acquisition synchronization, mainly with respect to cardiac motion and breathing using retrospective gating, where the navigator signal is obtained solely from the acquired data, so without any external equipment such as the ECG or respiratory sensors. This paper takes into account situations where steady-state has been reached and also those where it has not, by means of contrast agent injection or by inversion pulses.
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Quantification of Perfusion using MRI ASL Methods
Kolajová, Martina ; Mézl, Martin (referee) ; Jiřík, Radovan (advisor)
This bachelor thesis deals with quantification of perfusion using a contrast-free MRI technique called „Arterial Spin Labeling“ (ASL). Firstly, the physical principle of magnetic resonance imaging and the concept of perfusion will be described for better understanding of the subject. The next chapters will focus on the ASL method itself and perfusion quantification using mathematical models, namely T1 perfusion and Standard. The algorithm for preprocessing and analysis of selected datasets, designed in the thesis, is implemented using the program MATLAB. Program BASIL was used for further processing. The outputs in the form of perfusion and ATT maps and model fitting processes using various models from both programs are compared and evaluated.
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Non-contrast MRI perfusion imaging
Kruml, Ondřej ; Jiřík, Radovan (referee) ; Krátká, Lucie (advisor)
This bachelor paper is focused on the magnetic resonance perfusion imaging technic without the usage of an external contrast media. This paper contains a look at the basic functional principle of the magnetic resonance. The focus is then set set on the Arterial Spin Labeling (ASL) technic. The basic principle of ASL uses protons from the water mocelules in arterial blood as an endogenous contrast agent. This technic can be used for obtaining a perfusion map of any tissue without the usage of invasiont echnics or contrast agents. The quantification of perusion was done applying the FAIR-RARE scheme, which belongs to the large family pulsed ASL.
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Quantitative analysis of matrix elements using SIMS and LEIS methods
Staněk, Jan ; Šik, Ondřej (referee) ; Bábor, Petr (advisor)
This thesis studies comparison and connection of two spectrometric methods – low energy ion scattering spektrometry (LEIS) and secondary ion mass spectrometry (SIMS). SIMS method, despite its many positive qualities, suffers of so called matrix effect, which makes quantifiaction of data very difficult. LEIS method on the other hand is immune to this effect and so it’s suitable completion of SIMS method. As a convenient sample have been chosen AlGaN samples with various concentration of gallium and aluminium. In the first part of thesis is introduced physical essence of SIMS and LEIS method, experimental details and studied samples. In second part of the thesis there’s a description of measurements and comparison of data gained by each method.
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The usage of the "Ethanol as internal standard" method for the SPME-GC/FID analysis of volatile compounds in alcoholic products
Zavoralová, Lucie ; Korban, Anton (advisor) ; Sobotníková, Jana (referee)
This bachelor thesis dealt with the optimization of a method for the determination of 10 volatile compounds occurring as minor components in alcoholic products. The quantification was performed by the internal standard method, comparing the results using 1-pentanol and ethanol as classical and proposed internal standards, respectively. In the case of ethanol usage, better repeatability and accuracy of the results were expected as this method does not require any sample pre-treatment. The optimized measurement method was monitored for both internal standards, while following these parameters - repeatability, recovery, linearity and limits of detection and quantification. It was found out that, as expected, the method of the proposed ethanol internal standard gives more accurate results for the analysis of real alcoholic beverage samples. However, it did not outperform the classical internal standard method in all parameters. That one gave better results for repeatability and linearity for the set of calibration solutions measured, despite the fact that each sample had to be pre-treated. It was also found that samples with a high ethanol or other volatile content were not suitable for SPME analysis, because the fibre then loses its ability to sorb these substances in the same proportions and...
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The influence of tanning chemical agens on DNA degradation
Hebenstreitová, Kristýna ; Vaněk, Daniel (advisor) ; Novák, Jindřich (referee)
The illegal wildlife trade is currently on the rise, and it is becoming the fourth most lucrative sector of crime. The traded commodities of this sector are, for example, various animal artefacts from skins, teeth, scales, tusks, claws to whole animal bodies, as well as eggs of endangered birds (parrots and birds of prey) or amphibians and snakes. The rarer the species is, the higher the demand for it grows. Wildlife trade is regulated (among other things) under the international CITES convention (Convention on International Trade in Endangered Species of Wild Fauna and Flora). Proving that this convention has been violated, is complex process and can be very difficult to achieve. In many cases a DNA analysis of the artefact, is the only way to prove, that it originates from a protected animal species and not from a species with which it is legal to trade. This thesis deals with a specific type of animal artefact - tanned skins. With this type of biological material, it is often problematic to obtain amplifiable DNA (deoxyribonucleic acid). This thesis is investigating the influence of the chemicals used in the tanning process on the DNA degradation. Furthermore, it analyses, the influence of these substances on the inhibition of the polymerase chain reaction. The quantity of DNA is determined...
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