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Tool for Classification of Lifestyle Traits Based on Metagenomic Data from the Large Intestine
Kubica, Jan ; Hon, Jiří (referee) ; Smatana, Stanislav (advisor)
This thesis deals with analysis of human microbiome using metagenomic data from large intestine. The main focus is placed on bacteria composition in a sample on different taxonomic levels regarding the lifestyle traits of an individual. For this purpose, a tool for classification of several attributes was created. It considers attributes like diet type and eating habits (vegetarian, vegan, omnivore), gluten and lactose intolerance, body mass index, age or sex. From range of machine learning perspectives considering K Nearest Neighbours (kNN), Random Forest (RF) and Support Vector Machines (SVM) were used. Datasets for training and final evaluation of the classifier were taken from American Gut project. The thesis also focuses on particular problems with metagenomic datasets like its multidimensionality, sparsity, compositional character and class imbalance.
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Automatic Recognition of Logopaedic Defect in Speech Utterances
Dušil, Lubomír ; Atassi, Hicham (referee) ; Smékal, Zdeněk (advisor)
The thesis is aimed at an analysis and automatic detection of logopaedic defects in speech utterance. Its objective is to facilitate and accelerate the work of logopaedists and to increase percentage of detected logopaedic defects in children of the youngest possible age followed by the most successful treatment. It presents methods of speech work, classification of the defects within individual stages of child development and appropriate words for identification of the speech defects and their subsequent remedy. After that there are analyses of methods of calculating coefficients which reflect human speech best. Also classifiers which are used to discern and determine whether it is a speech defect or not. Classifiers exploit coefficients for their work. Coefficients and classifiers are being tested and their best combination is being looked for in order to achieve the highest possible success rate of the automatic detection of the speech defects. All the programming and testing jobs has been conducted in the Matlab programme.
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Tool for Classification of Lifestyle Traits Based on Metagenomic Data from the Large Intestine
Kubica, Jan ; Hon, Jiří (referee) ; Smatana, Stanislav (advisor)
This thesis deals with analysis of human microbiome using metagenomic data from large intestine. The main focus is placed on bacteria composition in a sample on different taxonomic levels regarding the lifestyle traits of an individual. For this purpose, a tool for classification of several attributes was created. It considers attributes like diet type and eating habits (vegetarian, vegan, omnivore), gluten and lactose intolerance, body mass index, age or sex. From range of machine learning perspectives considering K Nearest Neighbours (kNN), Random Forest (RF) and Support Vector Machines (SVM) were used. Datasets for training and final evaluation of the classifier were taken from American Gut project. The thesis also focuses on particular problems with metagenomic datasets like its multidimensionality, sparsity, compositional character and class imbalance.
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Automatic Recognition of Logopaedic Defect in Speech Utterances
Dušil, Lubomír ; Atassi, Hicham (referee) ; Smékal, Zdeněk (advisor)
The thesis is aimed at an analysis and automatic detection of logopaedic defects in speech utterance. Its objective is to facilitate and accelerate the work of logopaedists and to increase percentage of detected logopaedic defects in children of the youngest possible age followed by the most successful treatment. It presents methods of speech work, classification of the defects within individual stages of child development and appropriate words for identification of the speech defects and their subsequent remedy. After that there are analyses of methods of calculating coefficients which reflect human speech best. Also classifiers which are used to discern and determine whether it is a speech defect or not. Classifiers exploit coefficients for their work. Coefficients and classifiers are being tested and their best combination is being looked for in order to achieve the highest possible success rate of the automatic detection of the speech defects. All the programming and testing jobs has been conducted in the Matlab programme.
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