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Path Planning Algorithms Visualisation
Řepka, Michal ; Uhlíř, Václav (referee) ; Rozman, Jaroslav (advisor)
Finding of collision free path is central in creation of mobile, autonomous robot. Goal of this paper is to show the most important algorithms implementing such solutions. It also describes application that is being created to allow students experiment with these methods. For this purpose it uses library that was introduced by Jakub Rusnák in 2017, which means this is a continuation and possibly extension of his work.
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Path Planning Algorithms Visualisation
Řepka, Michal ; Uhlíř, Václav (referee) ; Rozman, Jaroslav (advisor)
Finding of collision free path is central in creation of mobile, autonomous robot. Goal of this paper is to show the most important algorithms implementing such solutions. It also describes application that is being created to allow students experiment with these methods. For this purpose it uses library that was introduced by Jakub Rusnák in 2017, which means this is a continuation and possibly extension of his work.
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Software for molecular dynamics
ŠILHAVÁ, Kristýna
The software for molecular dynamics provides the ability of simulating systems that consist of millions of particles, just for a few nanoseconds. This method allows for the carrying out of virtual experiments without real laboratory equipment and only with computer technology. Molecular dynamics play an important role in understanding the structure and function of biological, organic and inorganic systems. The objective of this thesis was to introduce the basics of molecular dynamics, solve model tasks in Amber software and Gromacs and to compare their capabilities. I have worked on the Hermes Computer Cluster that belongs to the Faculty of Science at the University of South Bohemia and this was part of the MetaCentrum Project. I have worked with both programs using the command line of the Linux Operating System. This thesis describes all of the file formats that are needed for working with these programs, and how they are to be used. I have built up several systems in Gromacs and Amber: 1) water 2) water and ions 3) solvated lysozyme. Based upon these sample systems, I have compared the basic utilities for preparation, the execution and the analysis of these simulations. This thesis should serve as a quick introduction and familiarization with Amber software and Gromacs.
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