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Spectroscopy study of metal complexes with terpyridyl ligands
Kožíšek, Jan ; Šloufová, Ivana (advisor) ; Procházka, Marek (referee)
The work is focused on preparation and characterization of octahedral Fe(II) complexes of 2,2′:6′,2′′-terpyridine (tpy) substituted in 4' position by various groups: Cl (tpyCl), chlorophenyl (tpyPhCl) and 2-thienyl (Ttpy)). Formation and stability of prepared complexes were studied by UV/vis spectroscopy on the basis of titration of tpy ligands by Fe(II) ions. The molar absorption coefficient of the metal-to-ligand charge transfer (MLCT) band was found to increase in the order: tpy < tpyCl < tpyPhCl < Ttpy. The MLCT band position increases in the same order, starting from 551 nm for [Fe(tpy)2]2+ to 576 nm for [Fe(Ttpy)2]2+ . Raman scattering (RS) spectra of tpy ligands were obtained upon non-resonance 780 nm excitation. Four excitation wavelengths (445, 532, 633 a 780 nm) were used for measurement Fe(II) complexes. The excitation profiles of both Raman scattering and surface-enhanced Raman scattering (SERS) spectra were constructed for [Fe(tpyCl)2]2+ complex. On the basis of DFT calculations performed for this complex, the Raman active modes have been assigned to the symmetry species of the D2d point group. Similarly as for the previously studied [Fe(tpy)2]2+ complex, activation of E modes in the region of MLCT band suggests contribution of Herzberg-Teller mechanism to the overall molecular...
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Optical responses of biomolecules on regular metal plasmonic nanostructures
Šubr, Martin ; Procházka, Marek (advisor) ; Michl, Martin (referee) ; Valenta, Jan (referee)
Title: Optical Responses of Biomolecules on Regular Metal Plasmonic Nanostructures Author: Martin Šubr Department: Institute of Physics of Charles University Supervisor of the doctoral thesis: prof. RNDr. Marek Procházka, Dr., Institute of Physics of Charles University Abstract: Adsorption of molecules on metal plasmonic nanostructures leads to significant enhancement of many optical processes, such as Raman scattering (surface-enhanced Raman scattering - SERS) or fluorescence (surface-enhanced fluorescence - SEF). Two groups of substrates were tested within this thesis: (i) Silver nanorods prepared by oblique angle vapor deposition, and (ii) silver and gold nanoislands growing on magnetron-sputtered polytetrafluoroethylene film. Step-by- step optimization process was performed on the nanoislands in order to obtain optimum SERS sensitivity and reproducibility. Detailed SERS intensity profiles were obtained using gradient nanostructures with the localized surface plasmon resonance (LSPR) condition varying across the sample and three different excitation wavelengths. It was also found that spectral position and height of the LSPR band can be controlled simultaneously using mixed gold/silver nanoislands. Detailed investigation of polarization- and angular- dependences of anisotropic silver nanorods was...
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Designing and testing of new metal nanosubstrates for biomolecular sensors based on surface-enhanced Raman scattering (SERS) spectroscopy
Peksa, Vlastimil ; Procházka, Marek (advisor) ; Matějka, Pavel (referee) ; Richter, Ivan (referee)
Title: Designing and testing of new metal nanosubstrates for biomolecular sensors based on surface-enhanced Raman scattering (SERS) spectroscopy Author: Vlastimil Peksa Department: Institute of Physics of Charles University Supervisor: doc. RNDr. Marek Procházka, Ph.D., Institute of Physics of Charles University Abstract: This experimental methodical work was aimed at the optimization of selected gold and silver substrates and their use in construction of SERS-based biosensors, including following practical application. Several types of substrates, fabricated via a combination of bottom-up techniques on solid surfaces, were tested. The properties of these substrates were examined with probe molecules, namely methylene blue, porphyrins and tryptophan, on a confocal Raman microspectrometer. Obtained findings about the influence of analyte application, objective focusing and internal intensity standard were exploited for optimization of measurement procedures with regard to sensitivity, accuracy and reproducibility. A method for quantitative detection of food dye azorubine (E 122) in commercially available drinks was developed, based on these findings. Its results have shown its potential as a pre-scan method for field application and preliminary testing. Keywords: Metal nanosubstrates, biomolecules,...
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Surface-enhanced Raman microspectroscopy of biomolecules and biological systems
Šimáková, Petra ; Procházka, Marek (advisor) ; Michl, Martin (referee) ; Šloufová, Ivana (referee)
The aim of this thesis was using surface-enhanced Raman scattering (SERS) microspectroscopy for the study of biomolecules and biological systems. The main probe molecule was cationic porphyrin H2TMPyP, however, other porphyrins, tryptophan and two lipids were also used. The sensitivity and reproducibility of several solid SERS substrates: (i) Au and Ag nanoparticles (NPs) immobilized via a bifunctional linker, (ii) AgNPs immobilized by drying, (iii) highly ordered Au and Ag film-over-nanosphere (FON) and (iv) Ag-coated insect wings were compared. On most of the solid substrates, the lowest detected H2TMPyP concentration was ~10-8 M. The highest sensitivity was provided by the dried drops of AgNPs/analyte mixture, where concentrations 1×10-10 M TMPyP, 1×10-5 M tryptophan, 2×10-7 M DSPC and 3×10-7 M DMTAP were detected. Nevertheless, the spectral reproducibility was decreased due to porphyrin metallation and perturbation of the lipid spectra in comparison to their Raman spectra from solution. The highest reproducibility was achieved by AuFON and Ag-coated insect wings. Finally, the AgNPs modified by PEG polymers were tested for intracellular application using HeLa cancer cells. Metallation of H2TMPyP served to probe the accessibility of PEG- AgNPs surface. The results proved that the accessibility...
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The CVS method as a diagnostic of the cardiovascular system
Procházka, Marek ; Jelen, Karel (advisor) ; Tlapáková, Eva (referee)
Title: The CVS method as a diagnostic of the cardiovascular system Objective: The aim of this thesis is to introduce the CVS (cardiovascular system) method as a potential diagnostic method to detect the overloading of the heart muscle, and thereby increased susceptibility to subsequent myocardial infarction and hypertension. Method: This thesis presents a data analysis on different groups of people, which were provided to us during the development of the CVS method. These were several groups of healthy individuals (athletes) and three groups of patients suffering from problems with the cardiovascular system (colaps conditions, obesity and hypertension). The groups were measured for their values of the heart rate and blood pressure at rest and during exercise on a bicycle ergometer. Subsequently the energy required to pump blood to the heart muscle and climbing speed pulse pressure depending on the heart rate was evaluated. Results: The CVS method shows differences in the energy consumption of the heart muscle in various groups of people. The results showed that at the same level of exercise the load of the heart muscle is higher by patients than by athletes. Considering the samples that we had available, the CVS method proved its diagnostic value when evaluating the overall effectiveness of the...
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Assembling of Ag and Au nanoparticles mediated by terpyridine-based oligomers: Relationship between morphology and spectral characteristics
Prusková, Markéta ; Šloufová, Ivana (advisor) ; Procházka, Marek (referee)
This work is aimed at the preparation and morphological and spectroscopic characterization of the interphase nanocomposite (NC) two-dimensional (2D) self-assembled systems of Ag and Au nanoparticles (NPs). The NPs were functionalized with the following ligands with terpyridine end-groups: 2,2′:6′,2′′-terpyridine (tpy), 4'-(2-thienyl)-2,2':6',2''- terpyridine (T-tpy), α,ω-bis(terpyridyl)-2,2'-bithiophene (tpy-2T-tpy) and α,ω-bis(terpyridyl)- 2,2':5',2''-terthiophene (tpy-3T-tpy). The morphological analysis of transmission electron micrographs proves the preservation of the average interparticle distance in closely spaced NP pairs, independent of the ligand. The value of the total average interparticle distance increases in the order: tpy < T-tpy < tpy- 2T-tpy < tpy-3T-tpy, while the average occupied area fraction in the same order decreases. The morphological descriptors (i.e. interparticle distance and occupied area fraction) were found to correlate with the shift of the SPE (surface plasmon extinction) maxima of NCs (tpy > T-tpy > tpy-2T-tpy > tpy-3T-tpy). The results show that the shift of SPE band maximum depends on the degree of surface plasmon delocalisation rather than on the value of the average interparticle distance in closely spaced NP pairs. The smaller are the islands formed by closely...
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SERS spectroscopy of model biomolecules for SERS biosensing
Šubr, Martin ; Procházka, Marek (advisor) ; Michl, Martin (referee)
Title: SERS spectroscopy of model biomolecules for SERS biosensing Author: Martin Šubr Department: Institute of Physics of Charles University Supervisor: doc. RNDr. Marek Procházka, Dr., Institute of Physics of Charles University Abstract: The main requirement for surface enhanced Raman scattering (SERS)-based biomolecular sensing is high sensitivity and spectral reproducibility. For this purpose, ordered silver and gold nanostructures fabricated by magnetron sputtering and lithography methods at cooperating institutes were tested in this work. Reproducible SERS spectra of employed model biomolecules (amino acids, lysozyme and albumin) were obtained on ordered silver surfaces at concentrations 10-4 M - 10-6 M and as low as ≈ 10-7 M in the case of porphyrins. SERS spectra of certain biomolecules were also compared to spectra measured on silver colloid. The limit of detection provided by hydroxylamine-reduced silver colloid, using KCl as an aggregating agent, is substantially lower (on the order of 10-8 M for cysteine), but with lower spectral reproducibility. The main drawback of SERS spectra measured on silver surfaces was the occurrence of spurious bands resulting from the preparation procedure. In the case of sputter-deposited silver surfaces, it was found that keeping the substrates several hours in...
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Complex diffractive structures for surface plasmon resonance sensors
Vala, Milan ; Homola, Jiří (advisor) ; Richter, Ivan (referee) ; Procházka, Marek (referee)
Title: Complex diffractive structures for surface plasmon resonance sensors Author: Milan Vala Institute of Photonics and Electronics ASCR, v.v.i. Supervisor of the doctoral thesis: Prof. Jiří Homola, Ph.D., DSc. Institute of Photonics and Electronics, ASCR, v.v.i. Abstract: Nowadays, biosensors based on surface plasmon resonance (SPR) present one of the most advanced label-free optical biosensor technologies. These sensors are based on the monitoring of refractive index changes in the vicinity of a plasmonic metal and enable both rapid and sensitive detection of various biological or chemical agents as well as the analysis of biomolecular interactions in real time. This doctoral thesis presents the results of research of advanced diffractive structures having benefits for SPR biosensor technology. In addition to a theoretical analysis, this work consists of the fabrication and characterization of selected diffractive structures, and furthermore, the development of novel types of SPR biosensors based on these structures. In particular, the results presented in this thesis include the development of a novel method of fabrication of periodic plasmonic arrays based on multiple-beam interference lithography, the development of compact high-resolution diffraction grating-based SPR devices, and development of...
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