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Mass spectrometry imaging
Vrkoslav, Vladimír ; Strnad, Štěpán ; Kučera, L.
The course will focus on MALDI mass spectrometry imaging. Knowledge and procedures of sample preparation, matrix application, measurement, and evaluation of MALDI MSI will be summarized. The first part will be followed by a block dedicated to the practical experience of MALDI MSI of lipids,metabolites, and other analytes on tissue sections and other planar surfaces. We will also explain MSI by other ionization techniques (DESI, DAPPI, LAESI, etc.)
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HPLC: NEW APPROACH TO THE ANALYSIS OF ALIPHATIC HYDROCARBONES WITH LONG CHAIN
Vít, Martin ; Vrkoslav, Vladimír (advisor) ; Schwarzová, Karolina (referee)
The aim of this diplom thesis was development of the reverse phased high performance liquid chromatography (RP-HPLC) for analysis the aliphatic hydrocarbons with long chain and optimalization of this method. In theoretical part is described occurrence and properties of a hydrocarbons, also used separation methods and detectors - evaporative light scattering detector (ELSD) and matrix assisted laser desorption ionization with time of flight analyzer. In experimental part is described izolation of cuticular hydrocarbons from a fly Neobellieria bullata. It was study experimental conditions of separation and detection izolated hydrocarbons. It was performed deep optimalization of conditions on RP-HPLC - composition of mobile phase, gradient, mobile phase flow rate and column temperature. Method optimalization was done by ELSD. It was used kombination of two solvents to mobile phase - acetonitrile : ethylacetate, mobile phase stream 0,8 ml/min and column temperature 50řC were found as optimal conditions for analytical separation. This method were aplicated for analysis cuticular hydrocarbons from fly specie Neobellieria bullata. During separation were collected fractions and then fractions were determined on MALDI-TOF. It was found 37 aliphatic hydrocarbons which included 25 up to 47 carbons and 0 to 3...
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Analysis of products of cardanol metathesis by HPLC-MS/MS method
Flenerová, Zuzana ; Čabala, Radomír (advisor) ; Vrkoslav, Vladimír (referee)
Cardanols are more and more used in the industry of polymers, resins, coatings, friction materials, etc. At right conditions, these lipid-like chemicals can undergo metathesis reaction. The main aim of the diploma thesis is an analysis of products of cardanol metathesis by HPLC-MS/MS. Standard 3,3'-hexadec-8-en-1,16-diyldiphenol, one of the main products of cardanol metathesis, was prepared for quantitative HPLC analysis. The standard was prepared in two steps. The first step was cardanol ethenolysis to give 3-(non-8-enyl)phenol. The second step was self-metathesis of 3-(non-8- enyl)phenol to give 3,3'-hexadec-8-en-1,16-diyldiphenol. The standard was characterised by HPLC/MS, MS/MS, EI-MS, UV/VIS, IR, Raman a NMR spectroscopy. The second part of the thesis is dedicated to the study of a mechanism of double-bond localization method in long chain hydrocarbons by acetonitrile APCI-MS. The formation of adducts [M + 55]+ , which are the key substances of this method, was studied using simple alkene models by MS and MS/MS. At the end, the structure and the mechanism of the formation of adducts [M + 55]+ were suggested. Key words: Cardanol, olefin metathesis, HPLC-MS, double-bond localization, APCI, acetonitrile
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Targeted analysis and metabolism of fatty acids in mice and humans
Oseeva, Marina ; Kuda, Ondřej (advisor) ; Cahová, Monika (referee) ; Vrkoslav, Vladimír (referee)
Widespread sedentary lifestyle and unhealthy eating habits in the last few decades have resulted in a dramatic increase of the number of people affected by obesity, type 2 diabetes, and cardiovascular diseases. The study of these pathological conditions revealed that impaired metabolism often causes these disorders. Lipid metabolism research has contributed significantly to determining mechanisms underlying metabolic disorders. Omega-3 fatty acids are an interesting target for lipidomics studies because they were shown to lower risk of cardiovascular diseases and are hypothesized to regulate lipid metabolism. In this work, I optimized lipid extraction and chemical modification methods for analysis of fatty acids profile of tissue samples and biofluids using comprehensive two-dimensional gas chromatography coupled to mass spectrometry (GCxGC-MS). At first, I evaluated the relative amount of omega-3 fatty acids in red blood cells (Omega-3 index) of people living in Czech Republic in either the capital city (n=476) or the rural region (n=388). For this large-scale project, I extracted phospholipids from red blood cell (RBC) membranes, transesterified them into fatty acid methyl esters (FAMEs), and measured their profile by GCxGC-MS. The mean Omega-3 index was 3.56 mol % and I detected no significant...
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Localization of double and triple donds positions in fatty acids methylesters by HPLC/APCI-MS2
Horká, Petra ; Vrkoslav, Vladimír ; Cvačka, Josef
Poloha a počet dvojných vazeb v alifatickém řetězci ovlivňuje fyzikální, chemické a biologické vlastnosti lipidů, avšak jednoznačné určení poloh těchto násobných vazeb je problematické. V roce 2012 byla publikována metoda kapalinové chromatografie s chemickou ionizací za atmosférického tlaku s hmotnostní detekcí (HPLC/APCI-MS) [1] vhodná pro analýzu polohy dvojných vazeb využívající tvorby molekulových aduktů [M + C3H5N]+. při APCI za přítomnosti acetonitrilu. Methylestery mastných kyselin (FAMEs) byly analyzovány HPLC/APCI-MS2 se 100% acetonitrilem jako mobilní fází. Při APCI docházelo v plynné fázi k tvorbě reaktivních částic, vznikajících ze složek mobilní fáze, které se vázaly na násobné vazby v alifatickém řetězci FAMEs za vzniku aduktu [M + C3H5N]+.. Kolizně indukovanou disociací (CID) aduktu [M + C3H5N]+., se získaly diagnostické fragmenty určující polohu (polohy) násobných vazeb. Zmíněná metoda byla evaluována pro běžně analyzované polynenasycené FAMEs s tradiční polohu dvojných vazeb (methylene-interrupted).
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Structural characterization of fatty acids with triple bond and unusual double bond positions by HPLC/APCI-MS2
Horká, Petra ; Vrkoslav, Vladimír ; Cvačka, Josef
Fatty acid methyl esters (FAMEs) were analyzed by reversed-phase HPLC coupled to atmospheric pressure chemical ionization (APCI) mass spectrometry. Acetonitrile was used as mobile phase. The gas-phase reactions of acetonitrile and unsaturated FAMEs in the APCI source provided [M + C3H5N]+• adducts. Subsequent MS/MS analysis of these ions gave diagnostic fragments. The formation and fragmentation of the acetonitrile-related adducts were utilized for the structural characterization of FAME with isolated double bonds in (Z)-9,19-hexacosadienoic acid methyl ester, FAME with conjugated double bonds in (Z)-9,11-octadecadienoic acid methyl ester and FAME with a triple bond in 9-octadecynoic acid methyl ester.
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